miRNA display CGI


Results 21 - 40 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31791 3' -55.1 NC_006938.1 + 31676 0.67 0.712784
Target:  5'- -gUCAGGGAGGUCcuGGucuguCaCCUCCa -3'
miRNA:   3'- cgAGUUCCUCCGGuuCCuu---GcGGAGG- -5'
31791 3' -55.1 NC_006938.1 + 41156 0.67 0.711721
Target:  5'- -gUCGAGGAcccGGCCAcggAGGAggcgaguGCGCUcCCg -3'
miRNA:   3'- cgAGUUCCU---CCGGU---UCCU-------UGCGGaGG- -5'
31791 3' -55.1 NC_006938.1 + 9967 0.67 0.691398
Target:  5'- aGCUCcagGAGGAcucGGCCGcuacGGGAuACGCaaCUCCc -3'
miRNA:   3'- -CGAG---UUCCU---CCGGU----UCCU-UGCG--GAGG- -5'
31791 3' -55.1 NC_006938.1 + 48742 0.67 0.680615
Target:  5'- uGUUCc-GGAcGGCCuuGGu-CGCCUCCa -3'
miRNA:   3'- -CGAGuuCCU-CCGGuuCCuuGCGGAGG- -5'
31791 3' -55.1 NC_006938.1 + 40685 0.67 0.680615
Target:  5'- aGCUcCGGGGAGcGCaUGAGGuccucgaccGAgGCCUCCa -3'
miRNA:   3'- -CGA-GUUCCUC-CG-GUUCC---------UUgCGGAGG- -5'
31791 3' -55.1 NC_006938.1 + 16575 0.68 0.674123
Target:  5'- uGCUCAAagagccgaucucGGAGGCUcgucccuggacccagAAGGAAUGCauuggUCCa -3'
miRNA:   3'- -CGAGUU------------CCUCCGG---------------UUCCUUGCGg----AGG- -5'
31791 3' -55.1 NC_006938.1 + 28952 0.68 0.669787
Target:  5'- gGCUCGAGGccgcuGGCCugggcGGGACagaGCCggUCCg -3'
miRNA:   3'- -CGAGUUCCu----CCGGuu---CCUUG---CGG--AGG- -5'
31791 3' -55.1 NC_006938.1 + 37838 0.68 0.658924
Target:  5'- aGCaUCAGGGcaucgucguGGGCCucGGGGAUGaCCUUCu -3'
miRNA:   3'- -CG-AGUUCC---------UCCGGu-UCCUUGC-GGAGG- -5'
31791 3' -55.1 NC_006938.1 + 54673 0.68 0.637136
Target:  5'- cGCUCGcacGGuGAcGGCCuuguuGAACGCCUCUc -3'
miRNA:   3'- -CGAGU---UC-CU-CCGGuuc--CUUGCGGAGG- -5'
31791 3' -55.1 NC_006938.1 + 21395 0.68 0.637136
Target:  5'- aGC-CGGGGAguGGCCcuucagcuucuuGAGGAucCGCUUCCg -3'
miRNA:   3'- -CGaGUUCCU--CCGG------------UUCCUu-GCGGAGG- -5'
31791 3' -55.1 NC_006938.1 + 9712 0.68 0.637136
Target:  5'- uGUUCGagcaggagaAGGAGGCCAAGuccaAGCGCCg-- -3'
miRNA:   3'- -CGAGU---------UCCUCCGGUUCc---UUGCGGagg -5'
31791 3' -55.1 NC_006938.1 + 50866 0.68 0.634955
Target:  5'- aGCUCGGcaccgacGGAgagaucacGGCCGAGGcgugcucAACGCCUuCCg -3'
miRNA:   3'- -CGAGUU-------CCU--------CCGGUUCC-------UUGCGGA-GG- -5'
31791 3' -55.1 NC_006938.1 + 40659 0.68 0.615329
Target:  5'- gGCUC-AGuGGGCCAAGGAcaagaAUGCCaUCg -3'
miRNA:   3'- -CGAGuUCcUCCGGUUCCU-----UGCGG-AGg -5'
31791 3' -55.1 NC_006938.1 + 20849 0.68 0.615329
Target:  5'- aGCgCGAGGuGGcCCGAGaccucGGCGUCUCCa -3'
miRNA:   3'- -CGaGUUCCuCC-GGUUCc----UUGCGGAGG- -5'
31791 3' -55.1 NC_006938.1 + 30615 0.68 0.615329
Target:  5'- --cCGAGGAGGUCGucGGGAgcacgaacGCGCCcgagCCg -3'
miRNA:   3'- cgaGUUCCUCCGGU--UCCU--------UGCGGa---GG- -5'
31791 3' -55.1 NC_006938.1 + 7160 0.69 0.59358
Target:  5'- aGUUCGGGGAGggagguggaGCCGGGGcGACGCC-Ca -3'
miRNA:   3'- -CGAGUUCCUC---------CGGUUCC-UUGCGGaGg -5'
31791 3' -55.1 NC_006938.1 + 61192 0.69 0.571958
Target:  5'- uCUCGGGGaAGaGCguGGGGACaGCCUCg -3'
miRNA:   3'- cGAGUUCC-UC-CGguUCCUUG-CGGAGg -5'
31791 3' -55.1 NC_006938.1 + 4151 0.69 0.561216
Target:  5'- -gUCGGGGAGGUC---GAGCGCgUCCu -3'
miRNA:   3'- cgAGUUCCUCCGGuucCUUGCGgAGG- -5'
31791 3' -55.1 NC_006938.1 + 12888 0.69 0.561216
Target:  5'- cGCUCGccGGGGCCucucc-CGCCUCCu -3'
miRNA:   3'- -CGAGUucCUCCGGuuccuuGCGGAGG- -5'
31791 3' -55.1 NC_006938.1 + 37536 0.7 0.550529
Target:  5'- aGCUCGccccaGAcGCCGAGGGAUGCCUUg -3'
miRNA:   3'- -CGAGUuc---CUcCGGUUCCUUGCGGAGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.