Results 1 - 20 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31792 | 3' | -52.4 | NC_006938.1 | + | 42790 | 0.66 | 0.902759 |
Target: 5'- cGCGGUCUCGacaguggUGUCGACCc-CUCCa -3' miRNA: 3'- aCGCUAGGGCaa-----GUAGUUGGacGAGG- -5' |
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31792 | 3' | -52.4 | NC_006938.1 | + | 61386 | 0.66 | 0.865218 |
Target: 5'- gGUGGUCgCGUagGUCAGCgUGCUg- -3' miRNA: 3'- aCGCUAGgGCAagUAGUUGgACGAgg -5' |
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31792 | 3' | -52.4 | NC_006938.1 | + | 46781 | 0.66 | 0.865218 |
Target: 5'- gUGCGA---CGagCG-CGACCUGCUCCg -3' miRNA: 3'- -ACGCUaggGCaaGUaGUUGGACGAGG- -5' |
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31792 | 3' | -52.4 | NC_006938.1 | + | 34384 | 0.67 | 0.856942 |
Target: 5'- -aUGAUCCCGUucacguUCAUCAACUcgUGCgacaucgugCCg -3' miRNA: 3'- acGCUAGGGCA------AGUAGUUGG--ACGa--------GG- -5' |
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31792 | 3' | -52.4 | NC_006938.1 | + | 7801 | 0.67 | 0.856942 |
Target: 5'- cUGCag-CCCGUUCAgccgggucuUgGACUUGCUCUu -3' miRNA: 3'- -ACGcuaGGGCAAGU---------AgUUGGACGAGG- -5' |
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31792 | 3' | -52.4 | NC_006938.1 | + | 28960 | 0.67 | 0.839682 |
Target: 5'- cGCGcaGUCCgGgUCGUCGAUCUGCa-- -3' miRNA: 3'- aCGC--UAGGgCaAGUAGUUGGACGagg -5' |
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31792 | 3' | -52.4 | NC_006938.1 | + | 51322 | 0.67 | 0.830714 |
Target: 5'- cGUGGUCCaGcUCAUCAGCUcugGCUuCCa -3' miRNA: 3'- aCGCUAGGgCaAGUAGUUGGa--CGA-GG- -5' |
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31792 | 3' | -52.4 | NC_006938.1 | + | 48366 | 0.68 | 0.802575 |
Target: 5'- aGCGcGUCCUGUcggagacCGUCGGCaCUGuCUCCa -3' miRNA: 3'- aCGC-UAGGGCAa------GUAGUUG-GAC-GAGG- -5' |
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31792 | 3' | -52.4 | NC_006938.1 | + | 3426 | 0.68 | 0.782891 |
Target: 5'- gGCGAagucguagCCCGccUUCAUCuugccggugcCCUGCUCCc -3' miRNA: 3'- aCGCUa-------GGGC--AAGUAGuu--------GGACGAGG- -5' |
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31792 | 3' | -52.4 | NC_006938.1 | + | 29897 | 0.68 | 0.782891 |
Target: 5'- cGCGAUCCUGUg----GAUCUGgUCCg -3' miRNA: 3'- aCGCUAGGGCAaguagUUGGACgAGG- -5' |
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31792 | 3' | -52.4 | NC_006938.1 | + | 33564 | 0.69 | 0.762569 |
Target: 5'- cGCG-UCCgGUUCGUCGgcaACCgUGCcgCCa -3' miRNA: 3'- aCGCuAGGgCAAGUAGU---UGG-ACGa-GG- -5' |
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31792 | 3' | -52.4 | NC_006938.1 | + | 18862 | 0.69 | 0.749063 |
Target: 5'- aUGCcaaGGUCCCGUUCGUCAAgcagauggagaaccUCUGCa-- -3' miRNA: 3'- -ACG---CUAGGGCAAGUAGUU--------------GGACGagg -5' |
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31792 | 3' | -52.4 | NC_006938.1 | + | 57201 | 0.69 | 0.741703 |
Target: 5'- aGCGAUgCCCug-CGUgcUGAUCUGCUCCa -3' miRNA: 3'- aCGCUA-GGGcaaGUA--GUUGGACGAGG- -5' |
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31792 | 3' | -52.4 | NC_006938.1 | + | 11992 | 0.69 | 0.720387 |
Target: 5'- aGCuGAUCCaGggCGUCGACgUcGCUCCg -3' miRNA: 3'- aCG-CUAGGgCaaGUAGUUGgA-CGAGG- -5' |
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31792 | 3' | -52.4 | NC_006938.1 | + | 24486 | 0.7 | 0.709589 |
Target: 5'- cGcCGAcCCUGgUCAUgAcGCCUGCUCCa -3' miRNA: 3'- aC-GCUaGGGCaAGUAgU-UGGACGAGG- -5' |
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31792 | 3' | -52.4 | NC_006938.1 | + | 15567 | 0.7 | 0.709589 |
Target: 5'- uUGCcg-CCCG--CGUCAGCCcGCUCCu -3' miRNA: 3'- -ACGcuaGGGCaaGUAGUUGGaCGAGG- -5' |
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31792 | 3' | -52.4 | NC_006938.1 | + | 2772 | 0.7 | 0.686675 |
Target: 5'- cGgGAUCCUGcgCgGUCGACCUGCcauacaugaacggUCCa -3' miRNA: 3'- aCgCUAGGGCaaG-UAGUUGGACG-------------AGG- -5' |
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31792 | 3' | -52.4 | NC_006938.1 | + | 4388 | 0.7 | 0.676777 |
Target: 5'- gUGuCGAUUCaCGcgcgaCAUCGACCUGCUCa -3' miRNA: 3'- -AC-GCUAGG-GCaa---GUAGUUGGACGAGg -5' |
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31792 | 3' | -52.4 | NC_006938.1 | + | 30877 | 0.7 | 0.665739 |
Target: 5'- gGCGGacggagCCCacgCGUCgGGCCUGCUCCu -3' miRNA: 3'- aCGCUa-----GGGcaaGUAG-UUGGACGAGG- -5' |
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31792 | 3' | -52.4 | NC_006938.1 | + | 10223 | 0.71 | 0.632475 |
Target: 5'- cGCGGaCaCCGUagUCGUCcACCcGCUCCg -3' miRNA: 3'- aCGCUaG-GGCA--AGUAGuUGGaCGAGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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