miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31793 3' -57.9 NC_006938.1 + 25437 0.66 0.66278
Target:  5'- aCGAGCCGGugcACguggagCUGcCGUUCGaCCAGc -3'
miRNA:   3'- -GCUCGGCC---UGa-----GGC-GCAAGCaGGUCu -5'
31793 3' -57.9 NC_006938.1 + 45611 0.66 0.652217
Target:  5'- gGAGCUGGagGCUUCGCcUUCGcugCCAGu -3'
miRNA:   3'- gCUCGGCC--UGAGGCGcAAGCa--GGUCu -5'
31793 3' -57.9 NC_006938.1 + 49380 0.66 0.631048
Target:  5'- aCGAGCCGGuCaugCUGCccUgGUCCGGGa -3'
miRNA:   3'- -GCUCGGCCuGa--GGCGcaAgCAGGUCU- -5'
31793 3' -57.9 NC_006938.1 + 15864 0.66 0.620461
Target:  5'- aCGAGCCGGGugccgugggcUUCCGCaacgccUUCuUCCGGAa -3'
miRNA:   3'- -GCUCGGCCU----------GAGGCGc-----AAGcAGGUCU- -5'
31793 3' -57.9 NC_006938.1 + 62470 0.67 0.599323
Target:  5'- cCGAaCCGaGACUgCGCG-UCGUCCAc- -3'
miRNA:   3'- -GCUcGGC-CUGAgGCGCaAGCAGGUcu -5'
31793 3' -57.9 NC_006938.1 + 48536 0.67 0.57724
Target:  5'- uGGGCCGGAcCUCCGCcaucuugaugcggGUgaaGUCCgAGGa -3'
miRNA:   3'- gCUCGGCCU-GAGGCG-------------CAag-CAGG-UCU- -5'
31793 3' -57.9 NC_006938.1 + 16397 0.67 0.557417
Target:  5'- cCGAGCCGGagagcggguGCUUCGCGgg---CCAGGg -3'
miRNA:   3'- -GCUCGGCC---------UGAGGCGCaagcaGGUCU- -5'
31793 3' -57.9 NC_006938.1 + 25344 0.68 0.547061
Target:  5'- cCGAGCCGGGuCUgCGCGUgacgCGcuUCCGc- -3'
miRNA:   3'- -GCUCGGCCU-GAgGCGCAa---GC--AGGUcu -5'
31793 3' -57.9 NC_006938.1 + 34709 0.68 0.536767
Target:  5'- --uGCUGGACUCCGU----GUCCAGGg -3'
miRNA:   3'- gcuCGGCCUGAGGCGcaagCAGGUCU- -5'
31793 3' -57.9 NC_006938.1 + 7108 0.69 0.486431
Target:  5'- gGAGCCGGagaggucaaGCUCCaCGagcucCGUCCGGAg -3'
miRNA:   3'- gCUCGGCC---------UGAGGcGCaa---GCAGGUCU- -5'
31793 3' -57.9 NC_006938.1 + 61790 0.69 0.476628
Target:  5'- gGAGCCGG-UUCCauucaGCG-UCGUCaCAGAg -3'
miRNA:   3'- gCUCGGCCuGAGG-----CGCaAGCAG-GUCU- -5'
31793 3' -57.9 NC_006938.1 + 10132 0.69 0.456369
Target:  5'- gGAGCggguggacgacuaCGGugUCCGCGUguucggCGUCgAGGg -3'
miRNA:   3'- gCUCG-------------GCCugAGGCGCAa-----GCAGgUCU- -5'
31793 3' -57.9 NC_006938.1 + 46513 0.72 0.30516
Target:  5'- aGGGCCGGAgUgUGaCGUUCGUUCAGc -3'
miRNA:   3'- gCUCGGCCUgAgGC-GCAAGCAGGUCu -5'
31793 3' -57.9 NC_006938.1 + 6367 1.09 0.000747
Target:  5'- aCGAGCCGGACUCCGCGUUCGUCCAGAa -3'
miRNA:   3'- -GCUCGGCCUGAGGCGCAAGCAGGUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.