miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31796 3' -60.3 NC_006938.1 + 1471 0.72 0.199618
Target:  5'- aGCUGCcu-CcCgagGGCGAGGUGGCCCg -3'
miRNA:   3'- gCGGCGcauGuGa--CCGUUCCGCCGGG- -5'
31796 3' -60.3 NC_006938.1 + 1633 0.66 0.482345
Target:  5'- cCGCCaaGUcggugaaGC-CUGGCAAGG-GGCCg -3'
miRNA:   3'- -GCGGcgCA-------UGuGACCGUUCCgCCGGg -5'
31796 3' -60.3 NC_006938.1 + 3770 0.66 0.513008
Target:  5'- uCGUCGgGcGCGgUGGCAAGGgUGGCa- -3'
miRNA:   3'- -GCGGCgCaUGUgACCGUUCC-GCCGgg -5'
31796 3' -60.3 NC_006938.1 + 7618 1.11 0.000268
Target:  5'- uCGCCGCGUACACUGGCAAGGCGGCCCa -3'
miRNA:   3'- -GCGGCGCAUGUGACCGUUCCGCCGGG- -5'
31796 3' -60.3 NC_006938.1 + 7698 0.67 0.417543
Target:  5'- uGCCaGUGUACGC-GGCGAacuucacuCGGCCCg -3'
miRNA:   3'- gCGG-CGCAUGUGaCCGUUcc------GCCGGG- -5'
31796 3' -60.3 NC_006938.1 + 7753 0.68 0.365712
Target:  5'- aGCuUGUGUAUugUGGUGgccGGGCaGCCCu -3'
miRNA:   3'- gCG-GCGCAUGugACCGU---UCCGcCGGG- -5'
31796 3' -60.3 NC_006938.1 + 8908 0.66 0.503025
Target:  5'- uCGCCGUccuugaggGCGUUGGCGAcaCGGCCCa -3'
miRNA:   3'- -GCGGCGca------UGUGACCGUUccGCCGGG- -5'
31796 3' -60.3 NC_006938.1 + 9733 0.71 0.256517
Target:  5'- aCGaCCGCGUACACauccgUGGCAaacAGGUcccagucgaaGGUCCa -3'
miRNA:   3'- -GC-GGCGCAUGUG-----ACCGU---UCCG----------CCGGG- -5'
31796 3' -60.3 NC_006938.1 + 10653 0.66 0.473609
Target:  5'- cCGCCGaGUAUgugACggaggacGGCAAGGUGGUCg -3'
miRNA:   3'- -GCGGCgCAUG---UGa------CCGUUCCGCCGGg -5'
31796 3' -60.3 NC_006938.1 + 11508 0.68 0.365712
Target:  5'- -uUCGCGagGCGC--GCAAGGCGGCCg -3'
miRNA:   3'- gcGGCGCa-UGUGacCGUUCCGCCGGg -5'
31796 3' -60.3 NC_006938.1 + 13075 0.66 0.513008
Target:  5'- aCGaCCGCGUcaaGCAg-GGCGAGGgaaaGCCCa -3'
miRNA:   3'- -GC-GGCGCA---UGUgaCCGUUCCgc--CGGG- -5'
31796 3' -60.3 NC_006938.1 + 14388 0.74 0.162319
Target:  5'- aGCCGgGaUGCAgcUUGGCGAGGCGcucuGCCCc -3'
miRNA:   3'- gCGGCgC-AUGU--GACCGUUCCGC----CGGG- -5'
31796 3' -60.3 NC_006938.1 + 14544 0.71 0.256517
Target:  5'- uGCCGC---CAUUGGCucGGCGGUCUa -3'
miRNA:   3'- gCGGCGcauGUGACCGuuCCGCCGGG- -5'
31796 3' -60.3 NC_006938.1 + 14837 0.68 0.399771
Target:  5'- gCGCCaagaagGCGUAC-CUGGgGAGaGUGGCUg -3'
miRNA:   3'- -GCGG------CGCAUGuGACCgUUC-CGCCGGg -5'
31796 3' -60.3 NC_006938.1 + 15564 0.7 0.269381
Target:  5'- cCGcCCGCGUcagcccGCucCUGGuCGAGGCcagcGGCCCa -3'
miRNA:   3'- -GC-GGCGCA------UGu-GACC-GUUCCG----CCGGG- -5'
31796 3' -60.3 NC_006938.1 + 18387 0.68 0.365712
Target:  5'- uCGCCaGCuUGCGgagGGUgucccacuugcgGAGGCGGCCCa -3'
miRNA:   3'- -GCGG-CGcAUGUga-CCG------------UUCCGCCGGG- -5'
31796 3' -60.3 NC_006938.1 + 18514 0.74 0.162319
Target:  5'- gGCCGgaCG-ACGgUGGCcucuGGGCGGCCCu -3'
miRNA:   3'- gCGGC--GCaUGUgACCGu---UCCGCCGGG- -5'
31796 3' -60.3 NC_006938.1 + 18562 0.66 0.504019
Target:  5'- aGCCGaggaugcuCGUGCACUucgccgagauaugcGGCAugcccggcgcguccgAGGCGGCgCa -3'
miRNA:   3'- gCGGC--------GCAUGUGA--------------CCGU---------------UCCGCCGgG- -5'
31796 3' -60.3 NC_006938.1 + 20224 0.68 0.357516
Target:  5'- gCGCCuCGUcccaGCGCUGGUugucGGaGGCCCa -3'
miRNA:   3'- -GCGGcGCA----UGUGACCGuu--CCgCCGGG- -5'
31796 3' -60.3 NC_006938.1 + 20829 0.82 0.045118
Target:  5'- cCGCCGCGcgggcaagACACaGcGCGAGGUGGCCCg -3'
miRNA:   3'- -GCGGCGCa-------UGUGaC-CGUUCCGCCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.