miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31796 3' -60.3 NC_006938.1 + 63050 0.67 0.417543
Target:  5'- uGCUGgGaAUACUGGCAGGaGCGuacGCCUc -3'
miRNA:   3'- gCGGCgCaUGUGACCGUUC-CGC---CGGG- -5'
31796 3' -60.3 NC_006938.1 + 50891 0.69 0.333709
Target:  5'- gGCCgagGCGUGCucaACgccuuccGCGAGGCGGCCg -3'
miRNA:   3'- gCGG---CGCAUG---UGac-----CGUUCCGCCGGg -5'
31796 3' -60.3 NC_006938.1 + 11508 0.68 0.365712
Target:  5'- -uUCGCGagGCGC--GCAAGGCGGCCg -3'
miRNA:   3'- gcGGCGCa-UGUGacCGUUCCGCCGGg -5'
31796 3' -60.3 NC_006938.1 + 49994 0.68 0.389342
Target:  5'- gGCCGCGcucgguccaACUGGaucgcccguguGGGUGGCCCc -3'
miRNA:   3'- gCGGCGCaug------UGACCgu---------UCCGCCGGG- -5'
31796 3' -60.3 NC_006938.1 + 39156 0.68 0.391068
Target:  5'- aCGCCagGCGUcCGCaGGCAAcGGCGGUg- -3'
miRNA:   3'- -GCGG--CGCAuGUGaCCGUU-CCGCCGgg -5'
31796 3' -60.3 NC_006938.1 + 34241 0.68 0.391068
Target:  5'- -aCCGCGUGCucaucCUcGGCGAGGCGGaggUCa -3'
miRNA:   3'- gcGGCGCAUGu----GA-CCGUUCCGCCg--GG- -5'
31796 3' -60.3 NC_006938.1 + 14837 0.68 0.399771
Target:  5'- gCGCCaagaagGCGUAC-CUGGgGAGaGUGGCUg -3'
miRNA:   3'- -GCGG------CGCAUGuGACCgUUC-CGCCGGg -5'
31796 3' -60.3 NC_006938.1 + 53944 0.68 0.399771
Target:  5'- uGCCGCGUACACgauCGAGaCGaGUCCg -3'
miRNA:   3'- gCGGCGCAUGUGaccGUUCcGC-CGGG- -5'
31796 3' -60.3 NC_006938.1 + 46026 0.67 0.410376
Target:  5'- gGCCGCGUgggccgagauugacaGCACgacggacacccaGGUGAaucuGGUGGCCCa -3'
miRNA:   3'- gCGGCGCA---------------UGUGa-----------CCGUU----CCGCCGGG- -5'
31796 3' -60.3 NC_006938.1 + 37527 0.69 0.333709
Target:  5'- cCGCCGCugGCaaGCUGGaCGAGGCcGCCa -3'
miRNA:   3'- -GCGGCGcaUG--UGACC-GUUCCGcCGGg -5'
31796 3' -60.3 NC_006938.1 + 46986 0.69 0.332935
Target:  5'- gGCgCGCGUcaccgugcgccACACgggUGGCAacgacgcugcccuGGGCGGCCg -3'
miRNA:   3'- gCG-GCGCA-----------UGUG---ACCGU-------------UCCGCCGGg -5'
31796 3' -60.3 NC_006938.1 + 56101 0.7 0.289644
Target:  5'- uCGCCGCGccuauCUGGacucugauGGCGGCCUg -3'
miRNA:   3'- -GCGGCGCaugu-GACCguu-----CCGCCGGG- -5'
31796 3' -60.3 NC_006938.1 + 20829 0.82 0.045118
Target:  5'- cCGCCGCGcgggcaagACACaGcGCGAGGUGGCCCg -3'
miRNA:   3'- -GCGGCGCa-------UGUGaC-CGUUCCGCCGGG- -5'
31796 3' -60.3 NC_006938.1 + 61040 0.75 0.131412
Target:  5'- aCGCCGCGUACAagaaccuguccuCUGGCAucaGCGGCa- -3'
miRNA:   3'- -GCGGCGCAUGU------------GACCGUuc-CGCCGgg -5'
31796 3' -60.3 NC_006938.1 + 18514 0.74 0.162319
Target:  5'- gGCCGgaCG-ACGgUGGCcucuGGGCGGCCCu -3'
miRNA:   3'- gCGGC--GCaUGUgACCGu---UCCGCCGGG- -5'
31796 3' -60.3 NC_006938.1 + 62689 0.73 0.180114
Target:  5'- aCGUCGC-UGcCACUcGGCAGGGCGGCg- -3'
miRNA:   3'- -GCGGCGcAU-GUGA-CCGUUCCGCCGgg -5'
31796 3' -60.3 NC_006938.1 + 1471 0.72 0.199618
Target:  5'- aGCUGCcu-CcCgagGGCGAGGUGGCCCg -3'
miRNA:   3'- gCGGCGcauGuGa--CCGUUCCGCCGGG- -5'
31796 3' -60.3 NC_006938.1 + 53031 0.72 0.210043
Target:  5'- uCGCCGCGcAguCUGGCAccacgguggAGGCaGCCUg -3'
miRNA:   3'- -GCGGCGCaUguGACCGU---------UCCGcCGGG- -5'
31796 3' -60.3 NC_006938.1 + 39245 0.72 0.220934
Target:  5'- uCGCCGCcu-CGCcGGCAAacGGUGGUCCg -3'
miRNA:   3'- -GCGGCGcauGUGaCCGUU--CCGCCGGG- -5'
31796 3' -60.3 NC_006938.1 + 14544 0.71 0.256517
Target:  5'- uGCCGC---CAUUGGCucGGCGGUCUa -3'
miRNA:   3'- gCGGCGcauGUGACCGuuCCGCCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.