miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31799 3' -55.4 NC_006938.1 + 8398 0.66 0.761281
Target:  5'- gUGGUCAuUGGACaggcaGAcGAGCCGgUCGc-- -3'
miRNA:   3'- -ACCAGU-ACCUG-----CU-CUCGGCgAGCaag -5'
31799 3' -55.4 NC_006938.1 + 7332 0.66 0.761281
Target:  5'- cUGGcuUCAUcccGGACGAGAGaCCguccugGCUCaGUUCg -3'
miRNA:   3'- -ACC--AGUA---CCUGCUCUC-GG------CGAG-CAAG- -5'
31799 3' -55.4 NC_006938.1 + 10191 0.66 0.751066
Target:  5'- aGGUCAcGGcCGAgGAGCaCGUggaCGUUCu -3'
miRNA:   3'- aCCAGUaCCuGCU-CUCG-GCGa--GCAAG- -5'
31799 3' -55.4 NC_006938.1 + 61635 0.66 0.740731
Target:  5'- cGGUCuuGUGGACGAGAGUgacuuUGCcCGa-- -3'
miRNA:   3'- aCCAG--UACCUGCUCUCG-----GCGaGCaag -5'
31799 3' -55.4 NC_006938.1 + 21551 0.67 0.676847
Target:  5'- gGGUC--GGACG-GAGCgGCUCGc-- -3'
miRNA:   3'- aCCAGuaCCUGCuCUCGgCGAGCaag -5'
31799 3' -55.4 NC_006938.1 + 18819 0.67 0.655102
Target:  5'- gUGGUCGcggGcGACGAGGGCgCGCggcUGUUUg -3'
miRNA:   3'- -ACCAGUa--C-CUGCUCUCG-GCGa--GCAAG- -5'
31799 3' -55.4 NC_006938.1 + 37754 0.68 0.644194
Target:  5'- cGGUCcuUGGAgCGGaAGCC-CUCGUUCu -3'
miRNA:   3'- aCCAGu-ACCU-GCUcUCGGcGAGCAAG- -5'
31799 3' -55.4 NC_006938.1 + 35213 0.68 0.633274
Target:  5'- aGGUCAUcucGGAcaucaagcaCGAccGUCGCUCGUUCa -3'
miRNA:   3'- aCCAGUA---CCU---------GCUcuCGGCGAGCAAG- -5'
31799 3' -55.4 NC_006938.1 + 35526 0.68 0.611441
Target:  5'- cGGaUCAUGG-CGucGAGCCacucCUCGUUCa -3'
miRNA:   3'- aCC-AGUACCuGCu-CUCGGc---GAGCAAG- -5'
31799 3' -55.4 NC_006938.1 + 32937 0.75 0.256939
Target:  5'- aGGUCGUGGAagcucGA-CCGCUCGUUCg -3'
miRNA:   3'- aCCAGUACCUgcu--CUcGGCGAGCAAG- -5'
31799 3' -55.4 NC_006938.1 + 8564 1.11 0.000882
Target:  5'- aUGGUCAUGGACGAGAGCCGCUCGUUCa -3'
miRNA:   3'- -ACCAGUACCUGCUCUCGGCGAGCAAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.