miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31800 3' -53.7 NC_006938.1 + 7165 0.66 0.827564
Target:  5'- uGGaGACGGCGAAuGGCcgaGCUcACAAGaGAGc -3'
miRNA:   3'- -UC-CUGCCGCUUcUCG---UGA-UGUUC-CUC- -5'
31800 3' -53.7 NC_006938.1 + 60145 0.66 0.827564
Target:  5'- cAGGugGGCGcGGGGCAg-ACGAccauugucgccGGAGc -3'
miRNA:   3'- -UCCugCCGCuUCUCGUgaUGUU-----------CCUC- -5'
31800 3' -53.7 NC_006938.1 + 55850 0.66 0.827564
Target:  5'- -cGACGGCGggGAGgaccaGCUGCc-GGAc -3'
miRNA:   3'- ucCUGCCGCuuCUCg----UGAUGuuCCUc -5'
31800 3' -53.7 NC_006938.1 + 61736 0.66 0.818339
Target:  5'- uGGACGGgGAc-GGCgACUACcuGGAGu -3'
miRNA:   3'- uCCUGCCgCUucUCG-UGAUGuuCCUC- -5'
31800 3' -53.7 NC_006938.1 + 6117 0.66 0.817406
Target:  5'- gAGGcauGgGGCGAcuaugccGGAGCcacggGCUACGAGGAc -3'
miRNA:   3'- -UCC---UgCCGCU-------UCUCG-----UGAUGUUCCUc -5'
31800 3' -53.7 NC_006938.1 + 18393 0.66 0.808917
Target:  5'- aAGGAcaaCGGC-AAGGGCACca-AGGGAGc -3'
miRNA:   3'- -UCCU---GCCGcUUCUCGUGaugUUCCUC- -5'
31800 3' -53.7 NC_006938.1 + 32656 0.67 0.78952
Target:  5'- aAGGACGGCaucauccggagGAAGAcGUACgaguuCGAGGAc -3'
miRNA:   3'- -UCCUGCCG-----------CUUCU-CGUGau---GUUCCUc -5'
31800 3' -53.7 NC_006938.1 + 10414 0.67 0.769459
Target:  5'- -cGAgGGCGAGGcGUGCUACAucgacauGGAGa -3'
miRNA:   3'- ucCUgCCGCUUCuCGUGAUGUu------CCUC- -5'
31800 3' -53.7 NC_006938.1 + 52227 0.67 0.769459
Target:  5'- uGGA-GGCGGAGGGCuCUuuggugGAGGAGg -3'
miRNA:   3'- uCCUgCCGCUUCUCGuGAug----UUCCUC- -5'
31800 3' -53.7 NC_006938.1 + 22417 0.67 0.759209
Target:  5'- cGaGACGGCccuGGucauGCGCgGCAAGGAGg -3'
miRNA:   3'- uC-CUGCCGcu-UCu---CGUGaUGUUCCUC- -5'
31800 3' -53.7 NC_006938.1 + 22168 0.67 0.742538
Target:  5'- cGGGAagUGGUGGauGGAGCACaaggaccggcgaucgUACAAGGAc -3'
miRNA:   3'- -UCCU--GCCGCU--UCUCGUG---------------AUGUUCCUc -5'
31800 3' -53.7 NC_006938.1 + 30590 0.67 0.738324
Target:  5'- aAGGGCGGCuacAAGGGCugggagacCGAGGAGg -3'
miRNA:   3'- -UCCUGCCGc--UUCUCGugau----GUUCCUC- -5'
31800 3' -53.7 NC_006938.1 + 16690 0.67 0.738324
Target:  5'- cAGG-UGGCGGGaAGcCACUACAggaaGGGAGg -3'
miRNA:   3'- -UCCuGCCGCUUcUC-GUGAUGU----UCCUC- -5'
31800 3' -53.7 NC_006938.1 + 19936 0.67 0.738324
Target:  5'- -cGuCGGCGuGGAGgACUcCAGGGAGg -3'
miRNA:   3'- ucCuGCCGCuUCUCgUGAuGUUCCUC- -5'
31800 3' -53.7 NC_006938.1 + 63406 0.68 0.717006
Target:  5'- uGGACGGCGAGGucCGCU---GGGAc -3'
miRNA:   3'- uCCUGCCGCUUCucGUGAuguUCCUc -5'
31800 3' -53.7 NC_006938.1 + 36680 0.68 0.706214
Target:  5'- cGGAgccUGGagaGAcAGAGCccACUGCGAGGAGa -3'
miRNA:   3'- uCCU---GCCg--CU-UCUCG--UGAUGUUCCUC- -5'
31800 3' -53.7 NC_006938.1 + 53496 0.68 0.695349
Target:  5'- cGGucuCGGUGAGG-GCACUGCuguccAGGAa -3'
miRNA:   3'- uCCu--GCCGCUUCuCGUGAUGu----UCCUc -5'
31800 3' -53.7 NC_006938.1 + 7807 0.68 0.684422
Target:  5'- cGGACGuGCuGAagugcAGGGCGCagauCAAGGAGg -3'
miRNA:   3'- uCCUGC-CG-CU-----UCUCGUGau--GUUCCUC- -5'
31800 3' -53.7 NC_006938.1 + 50748 0.68 0.684422
Target:  5'- cAGGGCcuGGCGuccGGGGCACUGCGcGGcGa -3'
miRNA:   3'- -UCCUG--CCGCu--UCUCGUGAUGUuCCuC- -5'
31800 3' -53.7 NC_006938.1 + 48351 0.69 0.66022
Target:  5'- cGGGCGGCGGugacGAGCGCguccugucGGAGa -3'
miRNA:   3'- uCCUGCCGCUu---CUCGUGauguu---CCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.