miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31803 3' -55.2 NC_006938.1 + 33522 0.66 0.747747
Target:  5'- --aGUUGUCcaugacgaacaGACCGGGCU-UCU-CCCu -3'
miRNA:   3'- uugCAACAG-----------CUGGCCCGGuAGAuGGG- -5'
31803 3' -55.2 NC_006938.1 + 41391 0.66 0.737406
Target:  5'- uGGCGUcugUGUUGACCguGGcGCCAcCgGCCCg -3'
miRNA:   3'- -UUGCA---ACAGCUGG--CC-CGGUaGaUGGG- -5'
31803 3' -55.2 NC_006938.1 + 49566 0.67 0.726961
Target:  5'- aGACGgugucGUCGACgGcGGCCGacuggaUCUugCCg -3'
miRNA:   3'- -UUGCaa---CAGCUGgC-CCGGU------AGAugGG- -5'
31803 3' -55.2 NC_006938.1 + 47962 0.67 0.726961
Target:  5'- gAACGUggucggGUCGGCCGuGGUCGaCUGCa- -3'
miRNA:   3'- -UUGCAa-----CAGCUGGC-CCGGUaGAUGgg -5'
31803 3' -55.2 NC_006938.1 + 61066 0.67 0.713246
Target:  5'- -cCGcugUGUCGauGCUGGGCCAgguguuggcguuccUCUGCUCg -3'
miRNA:   3'- uuGCa--ACAGC--UGGCCCGGU--------------AGAUGGG- -5'
31803 3' -55.2 NC_006938.1 + 59516 0.67 0.673568
Target:  5'- uGGCGaaGUCGGCCGGGuCCGgcgGCgCCa -3'
miRNA:   3'- -UUGCaaCAGCUGGCCC-GGUagaUG-GG- -5'
31803 3' -55.2 NC_006938.1 + 18723 0.68 0.656216
Target:  5'- gGugGUUGUcCGuguCCGGGUCGUCUcgguacuucugcgccGCCUc -3'
miRNA:   3'- -UugCAACA-GCu--GGCCCGGUAGA---------------UGGG- -5'
31803 3' -55.2 NC_006938.1 + 8296 0.68 0.630096
Target:  5'- gGugGUcGgCGACCGGcUCGUCUGCCUg -3'
miRNA:   3'- -UugCAaCaGCUGGCCcGGUAGAUGGG- -5'
31803 3' -55.2 NC_006938.1 + 17181 0.69 0.608331
Target:  5'- uGACGgugaugGUCGGCaugguGGGCCAgcuggUCUGCCa -3'
miRNA:   3'- -UUGCaa----CAGCUGg----CCCGGU-----AGAUGGg -5'
31803 3' -55.2 NC_006938.1 + 58451 0.7 0.537438
Target:  5'- gGACGUcaacgcggagaccuuUGUCGGCCuGGCCAgggACCUg -3'
miRNA:   3'- -UUGCA---------------ACAGCUGGcCCGGUagaUGGG- -5'
31803 3' -55.2 NC_006938.1 + 10716 0.71 0.481633
Target:  5'- uGACGgUGUCGGgCGuGGUCAUCgcCCCg -3'
miRNA:   3'- -UUGCaACAGCUgGC-CCGGUAGauGGG- -5'
31803 3' -55.2 NC_006938.1 + 46174 0.72 0.423129
Target:  5'- gGAUGUcGUuucCGGCCGuGCCGUCUGCCUg -3'
miRNA:   3'- -UUGCAaCA---GCUGGCcCGGUAGAUGGG- -5'
31803 3' -55.2 NC_006938.1 + 9683 1.1 0.001034
Target:  5'- cAACGUUGUCGACCGGGCCAUCUACCCg -3'
miRNA:   3'- -UUGCAACAGCUGGCCCGGUAGAUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.