miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31806 3' -55.3 NC_006938.1 + 506 0.67 0.676847
Target:  5'- aGuCAUCCUCGaaaaagaccUCGAGUCGCAGAGgAu -3'
miRNA:   3'- cCuGUAGGGGU---------GGUUCAGCGUCUCgU- -5'
31806 3' -55.3 NC_006938.1 + 1618 0.73 0.328638
Target:  5'- aGGCAUCCuacuccuCCGCCAAGUCGguGaAGCc -3'
miRNA:   3'- cCUGUAGG-------GGUGGUUCAGCguC-UCGu -5'
31806 3' -55.3 NC_006938.1 + 2962 0.67 0.709124
Target:  5'- cGGCGg-CCCGCC-AGUCGCgaccucGGAGCGu -3'
miRNA:   3'- cCUGUagGGGUGGuUCAGCG------UCUCGU- -5'
31806 3' -55.3 NC_006938.1 + 7198 0.66 0.730288
Target:  5'- -cGCGUCCgCguugACCAGG-CGCAGGGCc -3'
miRNA:   3'- ccUGUAGGgG----UGGUUCaGCGUCUCGu -5'
31806 3' -55.3 NC_006938.1 + 7216 0.66 0.719749
Target:  5'- cGGACcgCUCCggACgGAGcUCGUGGAGCu -3'
miRNA:   3'- -CCUGuaGGGG--UGgUUC-AGCGUCUCGu -5'
31806 3' -55.3 NC_006938.1 + 8064 0.67 0.687662
Target:  5'- cGGACAUCCaCCGCCAGGcCaaGGA-CAa -3'
miRNA:   3'- -CCUGUAGG-GGUGGUUCaGcgUCUcGU- -5'
31806 3' -55.3 NC_006938.1 + 8078 0.69 0.536025
Target:  5'- cGGGCGggagCUggGCCGGGUCGCcGAGCAc -3'
miRNA:   3'- -CCUGUa---GGggUGGUUCAGCGuCUCGU- -5'
31806 3' -55.3 NC_006938.1 + 10212 0.69 0.546639
Target:  5'- uGGACGUUCUCAC--AGUCGCccAGGGCu -3'
miRNA:   3'- -CCUGUAGGGGUGguUCAGCG--UCUCGu -5'
31806 3' -55.3 NC_006938.1 + 10646 0.7 0.494363
Target:  5'- -uACGUCCCCGCCGAGUaugUGaCGGAGg- -3'
miRNA:   3'- ccUGUAGGGGUGGUUCA---GC-GUCUCgu -5'
31806 3' -55.3 NC_006938.1 + 11891 0.67 0.709124
Target:  5'- aGGcCGUCUCCACCAAGguacUCGUcaacGAGUAc -3'
miRNA:   3'- -CCuGUAGGGGUGGUUC----AGCGu---CUCGU- -5'
31806 3' -55.3 NC_006938.1 + 12022 1.11 0.000908
Target:  5'- aGGACAUCCCCACCAAGUCGCAGAGCAc -3'
miRNA:   3'- -CCUGUAGGGGUGGUUCAGCGUCUCGU- -5'
31806 3' -55.3 NC_006938.1 + 17311 0.66 0.740731
Target:  5'- ---gAUCUCCGCCAGGuugcccUCGCGGAGg- -3'
miRNA:   3'- ccugUAGGGGUGGUUC------AGCGUCUCgu -5'
31806 3' -55.3 NC_006938.1 + 19655 0.67 0.66599
Target:  5'- cGGugAUCUCCACCAucuccccGUCcGCGaGGCAc -3'
miRNA:   3'- -CCugUAGGGGUGGUu------CAG-CGUcUCGU- -5'
31806 3' -55.3 NC_006938.1 + 21543 0.66 0.761281
Target:  5'- aGugGUCCCCGCCGAGgucCGUcuccAGCu -3'
miRNA:   3'- cCugUAGGGGUGGUUCa--GCGuc--UCGu -5'
31806 3' -55.3 NC_006938.1 + 21802 0.68 0.647468
Target:  5'- aGGCAccUCCCCGugcugguCCAGGUCGUcuaucucagagagccGGGGCAg -3'
miRNA:   3'- cCUGU--AGGGGU-------GGUUCAGCG---------------UCUCGU- -5'
31806 3' -55.3 NC_006938.1 + 22269 0.69 0.589679
Target:  5'- aGGGCuUCgCCUGCCAGgccGUCGCcgGGAGCGc -3'
miRNA:   3'- -CCUGuAG-GGGUGGUU---CAGCG--UCUCGU- -5'
31806 3' -55.3 NC_006938.1 + 22491 0.71 0.444487
Target:  5'- aGGGCcgUCUCGCUcuGGGUCGCGGGGUu -3'
miRNA:   3'- -CCUGuaGGGGUGG--UUCAGCGUCUCGu -5'
31806 3' -55.3 NC_006938.1 + 28495 0.66 0.750037
Target:  5'- uGACAUggCCCCGCCAcuccGGUgccggguugaccgUGUAGGGCGg -3'
miRNA:   3'- cCUGUA--GGGGUGGU----UCA-------------GCGUCUCGU- -5'
31806 3' -55.3 NC_006938.1 + 29482 0.66 0.740731
Target:  5'- uGAUcaGUCCCuCGCCGGGgaagUGCAGGcGCAg -3'
miRNA:   3'- cCUG--UAGGG-GUGGUUCa---GCGUCU-CGU- -5'
31806 3' -55.3 NC_006938.1 + 30309 0.68 0.644194
Target:  5'- gGGACAgUCCCAUCA--UCGCcGGAGCu -3'
miRNA:   3'- -CCUGUaGGGGUGGUucAGCG-UCUCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.