miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31806 3' -55.3 NC_006938.1 + 12022 1.11 0.000908
Target:  5'- aGGACAUCCCCACCAAGUCGCAGAGCAc -3'
miRNA:   3'- -CCUGUAGGGGUGGUUCAGCGUCUCGU- -5'
31806 3' -55.3 NC_006938.1 + 50729 0.68 0.644194
Target:  5'- uGGCAUCCuCCAgCuc-UCGCAGGGCc -3'
miRNA:   3'- cCUGUAGG-GGUgGuucAGCGUCUCGu -5'
31806 3' -55.3 NC_006938.1 + 34013 0.67 0.66599
Target:  5'- cGGACAUgCCgaaggCACCGAG-C-CAGAGCGa -3'
miRNA:   3'- -CCUGUAgGG-----GUGGUUCaGcGUCUCGU- -5'
31806 3' -55.3 NC_006938.1 + 506 0.67 0.676847
Target:  5'- aGuCAUCCUCGaaaaagaccUCGAGUCGCAGAGgAu -3'
miRNA:   3'- cCuGUAGGGGU---------GGUUCAGCGUCUCgU- -5'
31806 3' -55.3 NC_006938.1 + 39931 0.67 0.676847
Target:  5'- gGGGCGgggCCaCGCUcAGUgGCGGAGCGa -3'
miRNA:   3'- -CCUGUa--GGgGUGGuUCAgCGUCUCGU- -5'
31806 3' -55.3 NC_006938.1 + 8064 0.67 0.687662
Target:  5'- cGGACAUCCaCCGCCAGGcCaaGGA-CAa -3'
miRNA:   3'- -CCUGUAGG-GGUGGUUCaGcgUCUcGU- -5'
31806 3' -55.3 NC_006938.1 + 11891 0.67 0.709124
Target:  5'- aGGcCGUCUCCACCAAGguacUCGUcaacGAGUAc -3'
miRNA:   3'- -CCuGUAGGGGUGGUUC----AGCGu---CUCGU- -5'
31806 3' -55.3 NC_006938.1 + 32137 0.67 0.709124
Target:  5'- uGGGC-UCCCCuGCCcGGcUCGCAGAcCAu -3'
miRNA:   3'- -CCUGuAGGGG-UGGuUC-AGCGUCUcGU- -5'
31806 3' -55.3 NC_006938.1 + 7198 0.66 0.730288
Target:  5'- -cGCGUCCgCguugACCAGG-CGCAGGGCc -3'
miRNA:   3'- ccUGUAGGgG----UGGUUCaGCGUCUCGu -5'
31806 3' -55.3 NC_006938.1 + 63483 0.68 0.633274
Target:  5'- -aACGUCCCCAUCGAGU---GGGGCGg -3'
miRNA:   3'- ccUGUAGGGGUGGUUCAgcgUCUCGU- -5'
31806 3' -55.3 NC_006938.1 + 53407 0.68 0.622353
Target:  5'- uGGACAgcagugCCCuCACCGAGaccgaccugCGCGGuGGCAa -3'
miRNA:   3'- -CCUGUa-----GGG-GUGGUUCa--------GCGUC-UCGU- -5'
31806 3' -55.3 NC_006938.1 + 56998 0.68 0.600546
Target:  5'- gGGACGUUCagCAUCGgcGGUCaGCAGGGCGc -3'
miRNA:   3'- -CCUGUAGGg-GUGGU--UCAG-CGUCUCGU- -5'
31806 3' -55.3 NC_006938.1 + 1618 0.73 0.328638
Target:  5'- aGGCAUCCuacuccuCCGCCAAGUCGguGaAGCc -3'
miRNA:   3'- cCUGUAGG-------GGUGGUUCAGCguC-UCGu -5'
31806 3' -55.3 NC_006938.1 + 32820 0.7 0.49334
Target:  5'- cGACAaCCCCGCCAAGcuggccgcguggcUCG-AGGGCAg -3'
miRNA:   3'- cCUGUaGGGGUGGUUC-------------AGCgUCUCGU- -5'
31806 3' -55.3 NC_006938.1 + 10646 0.7 0.494363
Target:  5'- -uACGUCCCCGCCGAGUaugUGaCGGAGg- -3'
miRNA:   3'- ccUGUAGGGGUGGUUCA---GC-GUCUCgu -5'
31806 3' -55.3 NC_006938.1 + 41090 0.7 0.524435
Target:  5'- cGACAUCCCCcgaacucACCAGaUCGuCGGGGCc -3'
miRNA:   3'- cCUGUAGGGG-------UGGUUcAGC-GUCUCGu -5'
31806 3' -55.3 NC_006938.1 + 60129 0.7 0.525485
Target:  5'- uGugAUCUCCGCUAgacAGgugggCGCGGGGCAg -3'
miRNA:   3'- cCugUAGGGGUGGU---UCa----GCGUCUCGU- -5'
31806 3' -55.3 NC_006938.1 + 10212 0.69 0.546639
Target:  5'- uGGACGUUCUCAC--AGUCGCccAGGGCu -3'
miRNA:   3'- -CCUGUAGGGGUGguUCAGCG--UCUCGu -5'
31806 3' -55.3 NC_006938.1 + 46304 0.69 0.568056
Target:  5'- aGGA---CCCCAcgaucgauCCAAGUgGCAGGGCGg -3'
miRNA:   3'- -CCUguaGGGGU--------GGUUCAgCGUCUCGU- -5'
31806 3' -55.3 NC_006938.1 + 22269 0.69 0.589679
Target:  5'- aGGGCuUCgCCUGCCAGgccGUCGCcgGGAGCGc -3'
miRNA:   3'- -CCUGuAG-GGGUGGUU---CAGCG--UCUCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.