miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31808 3' -66.7 NC_006938.1 + 3375 0.66 0.260085
Target:  5'- ---gGCUCGCCaGGGCUUgUCCCaguGCUg -3'
miRNA:   3'- uccgCGAGCGGcCCCGGAgAGGG---CGG- -5'
31808 3' -66.7 NC_006938.1 + 59672 0.66 0.24808
Target:  5'- aAGGUGCUUGCCGcGcGCUUCUgagCCGCg -3'
miRNA:   3'- -UCCGCGAGCGGCcC-CGGAGAg--GGCGg -5'
31808 3' -66.7 NC_006938.1 + 31717 0.66 0.244569
Target:  5'- aGGGCGCgucagccagggcaGCCGGuGUCUCUuacaacguggUCCGCCa -3'
miRNA:   3'- -UCCGCGag-----------CGGCCcCGGAGA----------GGGCGG- -5'
31808 3' -66.7 NC_006938.1 + 49599 0.66 0.242251
Target:  5'- cAGcCGCUCGCCGaGGgauGCCUCcaaggUUCGCCg -3'
miRNA:   3'- -UCcGCGAGCGGC-CC---CGGAGa----GGGCGG- -5'
31808 3' -66.7 NC_006938.1 + 22542 0.66 0.240525
Target:  5'- aGGGUGCcgacgaacguguucUUGCCGGuGCC-CUCCuUGCCg -3'
miRNA:   3'- -UCCGCG--------------AGCGGCCcCGGaGAGG-GCGG- -5'
31808 3' -66.7 NC_006938.1 + 26932 0.67 0.204591
Target:  5'- cGGCGCg-GCCcgugacuGGGCCUgUCCCuCCg -3'
miRNA:   3'- uCCGCGagCGGc------CCCGGAgAGGGcGG- -5'
31808 3' -66.7 NC_006938.1 + 59424 0.68 0.185427
Target:  5'- uGGCGC-CGCCGGacccGGCCgacUUCGCCa -3'
miRNA:   3'- uCCGCGaGCGGCC----CCGGagaGGGCGG- -5'
31808 3' -66.7 NC_006938.1 + 16174 0.68 0.184969
Target:  5'- gAGaCGCUCagaccucgucgugGuuGGGGCCaucgUCUCUCGCCu -3'
miRNA:   3'- -UCcGCGAG-------------CggCCCCGG----AGAGGGCGG- -5'
31808 3' -66.7 NC_006938.1 + 32401 0.69 0.163713
Target:  5'- uGGGUGUUC-CCGGacGGCgaggagcugCUCUUCCGCCa -3'
miRNA:   3'- -UCCGCGAGcGGCC--CCG---------GAGAGGGCGG- -5'
31808 3' -66.7 NC_006938.1 + 7984 0.69 0.159654
Target:  5'- -uGUGCUCGgCGacccGGCCcagCUCCCGCCc -3'
miRNA:   3'- ucCGCGAGCgGCc---CCGGa--GAGGGCGG- -5'
31808 3' -66.7 NC_006938.1 + 58578 0.69 0.143947
Target:  5'- gGGGCGCUCguggaugGCCuGGGCaCUgUCCC-CCu -3'
miRNA:   3'- -UCCGCGAG-------CGGcCCCG-GAgAGGGcGG- -5'
31808 3' -66.7 NC_006938.1 + 22309 0.7 0.137157
Target:  5'- cGGUGcCUCGCCggaGGGGCUgaagacuaUCCCGUCc -3'
miRNA:   3'- uCCGC-GAGCGG---CCCCGGag------AGGGCGG- -5'
31808 3' -66.7 NC_006938.1 + 20028 0.7 0.130329
Target:  5'- cAGGCGCUCcCUGGaGUC-CUCCaCGCCg -3'
miRNA:   3'- -UCCGCGAGcGGCCcCGGaGAGG-GCGG- -5'
31808 3' -66.7 NC_006938.1 + 37161 0.7 0.120674
Target:  5'- aGGGUcucacGCU-GCCGGGGCCUCuggUCCCacggugacagggGCCg -3'
miRNA:   3'- -UCCG-----CGAgCGGCCCCGGAG---AGGG------------CGG- -5'
31808 3' -66.7 NC_006938.1 + 40318 0.7 0.120674
Target:  5'- aGGGCGU---UCGGGGUCUC-CCCGUCa -3'
miRNA:   3'- -UCCGCGagcGGCCCCGGAGaGGGCGG- -5'
31808 3' -66.7 NC_006938.1 + 12618 0.71 0.114611
Target:  5'- cAGGCcugccggaacCUCggGCCGGGGCUg-UCCCGCCa -3'
miRNA:   3'- -UCCGc---------GAG--CGGCCCCGGagAGGGCGG- -5'
31808 3' -66.7 NC_006938.1 + 58192 0.71 0.111687
Target:  5'- uGGCGCUCGUC-GGGUCUC-CCaCGaCCa -3'
miRNA:   3'- uCCGCGAGCGGcCCCGGAGaGG-GC-GG- -5'
31808 3' -66.7 NC_006938.1 + 51013 0.71 0.106048
Target:  5'- cGGCGCguUCGacgcugccaCCGGGGCCUC-CgCCGCg -3'
miRNA:   3'- uCCGCG--AGC---------GGCCCCGGAGaG-GGCGg -5'
31808 3' -66.7 NC_006938.1 + 57836 0.71 0.105774
Target:  5'- uGGGCuuUCcccagaaGCCaccGGCCUCUCCCGCCg -3'
miRNA:   3'- -UCCGcgAG-------CGGcc-CCGGAGAGGGCGG- -5'
31808 3' -66.7 NC_006938.1 + 47756 0.72 0.090697
Target:  5'- uGGC-CUCguGCUGGaGGCCUCUCCUccgGCCg -3'
miRNA:   3'- uCCGcGAG--CGGCC-CCGGAGAGGG---CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.