miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31808 5' -51 NC_006938.1 + 61130 0.72 0.658761
Target:  5'- gCGGCGAGGACuucACCUggGAGGGCuGGGc -3'
miRNA:   3'- aGCUGUUCCUG---UGGAagUUCUCG-CUC- -5'
31808 5' -51 NC_006938.1 + 59592 0.69 0.79784
Target:  5'- gCGACGcGGcaaGCACCUUCAAcGGCGGu -3'
miRNA:   3'- aGCUGUuCC---UGUGGAAGUUcUCGCUc -5'
31808 5' -51 NC_006938.1 + 59318 0.7 0.757072
Target:  5'- gUCGGCGAGGACGCgaUgGAGuucGCGGa -3'
miRNA:   3'- -AGCUGUUCCUGUGgaAgUUCu--CGCUc -5'
31808 5' -51 NC_006938.1 + 57148 0.66 0.937273
Target:  5'- aUCGugGAGGACuuguCCa-CGAGAGCcGGu -3'
miRNA:   3'- -AGCugUUCCUGu---GGaaGUUCUCGcUC- -5'
31808 5' -51 NC_006938.1 + 55660 0.69 0.83573
Target:  5'- gCGGCAAGGGCGgCCU--GGGAG-GAGg -3'
miRNA:   3'- aGCUGUUCCUGU-GGAagUUCUCgCUC- -5'
31808 5' -51 NC_006938.1 + 55525 0.71 0.703218
Target:  5'- cCGAUGAGGAaGCCgaUCuGGGGCGAGa -3'
miRNA:   3'- aGCUGUUCCUgUGGa-AGuUCUCGCUC- -5'
31808 5' -51 NC_006938.1 + 54837 0.74 0.558228
Target:  5'- aUCGACAgaAGGACACCUgCGuGAGCa-- -3'
miRNA:   3'- -AGCUGU--UCCUGUGGAaGUuCUCGcuc -5'
31808 5' -51 NC_006938.1 + 53290 0.71 0.692182
Target:  5'- aCGACGuGGACAUCacgUUCGAGAGCa-- -3'
miRNA:   3'- aGCUGUuCCUGUGG---AAGUUCUCGcuc -5'
31808 5' -51 NC_006938.1 + 50115 0.71 0.681086
Target:  5'- cCGcCGAGGgugucauucGCACCUUCGauggagAGGGCGAGa -3'
miRNA:   3'- aGCuGUUCC---------UGUGGAAGU------UCUCGCUC- -5'
31808 5' -51 NC_006938.1 + 41610 0.66 0.92008
Target:  5'- -gGGCuccaGAGGACGCCacgUCAgcagGGAGCGGc -3'
miRNA:   3'- agCUG----UUCCUGUGGa--AGU----UCUCGCUc -5'
31808 5' -51 NC_006938.1 + 40526 0.72 0.625107
Target:  5'- aCGACGAGGACGUCggCGAGAuCGAGu -3'
miRNA:   3'- aGCUGUUCCUGUGGaaGUUCUcGCUC- -5'
31808 5' -51 NC_006938.1 + 37618 0.67 0.900309
Target:  5'- gCGACAGGuGGCAgCCcUCAccaaGGAGCGuGa -3'
miRNA:   3'- aGCUGUUC-CUGU-GGaAGU----UCUCGCuC- -5'
31808 5' -51 NC_006938.1 + 36202 0.74 0.5255
Target:  5'- aUCGACGGGGACGCCaUCGGGucaCGAc -3'
miRNA:   3'- -AGCUGUUCCUGUGGaAGUUCuc-GCUc -5'
31808 5' -51 NC_006938.1 + 34199 0.66 0.94243
Target:  5'- aCGAgAGGGACAaggaCUUCGAGugGGUGuGg -3'
miRNA:   3'- aGCUgUUCCUGUg---GAAGUUC--UCGCuC- -5'
31808 5' -51 NC_006938.1 + 33833 0.76 0.422723
Target:  5'- aUCGugAGGGACGCUgUCGAG-GCGAu -3'
miRNA:   3'- -AGCugUUCCUGUGGaAGUUCuCGCUc -5'
31808 5' -51 NC_006938.1 + 33397 0.71 0.689968
Target:  5'- aCGACAAGGGCACCaUCcuuggcacaccGAGgGAGa -3'
miRNA:   3'- aGCUGUUCCUGUGGaAGuu---------CUCgCUC- -5'
31808 5' -51 NC_006938.1 + 33319 0.67 0.893156
Target:  5'- cCGACAAGcGCGCCgggUCGAGgaagaccgGGUGGGa -3'
miRNA:   3'- aGCUGUUCcUGUGGa--AGUUC--------UCGCUC- -5'
31808 5' -51 NC_006938.1 + 33141 0.67 0.900309
Target:  5'- aUCGcCAAGGGCAUa--CGcGAGCGGGa -3'
miRNA:   3'- -AGCuGUUCCUGUGgaaGUuCUCGCUC- -5'
31808 5' -51 NC_006938.1 + 32260 0.66 0.937273
Target:  5'- gUCGGCAGGGGaugggGCCUgcaguaCAAGGGCa-- -3'
miRNA:   3'- -AGCUGUUCCUg----UGGAa-----GUUCUCGcuc -5'
31808 5' -51 NC_006938.1 + 31048 0.66 0.93513
Target:  5'- -gGACGAGGGCGaaggcggcguCCUUCuuggccgccagacGGAGUGAGa -3'
miRNA:   3'- agCUGUUCCUGU----------GGAAGu------------UCUCGCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.