miRNA display CGI


Results 1 - 20 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31810 5' -58.4 NC_006938.1 + 20174 0.66 0.600729
Target:  5'- aUGCCAGACuGGAUGaUCaGCUUGGCg- -3'
miRNA:   3'- gAUGGUCUG-CCUGC-GGaUGGACCGga -5'
31810 5' -58.4 NC_006938.1 + 29281 0.66 0.600729
Target:  5'- -gGCCAG-CGGAUcCuCUACCUGGUg- -3'
miRNA:   3'- gaUGGUCuGCCUGcG-GAUGGACCGga -5'
31810 5' -58.4 NC_006938.1 + 34596 0.66 0.590073
Target:  5'- cCUGCC-GACGGACGCCgacGCCaaGUa- -3'
miRNA:   3'- -GAUGGuCUGCCUGCGGa--UGGacCGga -5'
31810 5' -58.4 NC_006938.1 + 29705 0.66 0.590073
Target:  5'- gUGCCAG-CGGGCGCgggUGCa-GGCCg -3'
miRNA:   3'- gAUGGUCuGCCUGCGg--AUGgaCCGGa -5'
31810 5' -58.4 NC_006938.1 + 7549 0.66 0.590073
Target:  5'- gCUACgCggGGACGGGCaagaccacgcugGCCaagcACCUGGCCg -3'
miRNA:   3'- -GAUG-G--UCUGCCUG------------CGGa---UGGACCGGa -5'
31810 5' -58.4 NC_006938.1 + 27329 0.66 0.590073
Target:  5'- --cCCAGACGGGCGag-ACgCUGGUCc -3'
miRNA:   3'- gauGGUCUGCCUGCggaUG-GACCGGa -5'
31810 5' -58.4 NC_006938.1 + 57690 0.66 0.583695
Target:  5'- --uCCAGGCGGAgaagagcaauuucucCgaGUCUGCUUGGCCUc -3'
miRNA:   3'- gauGGUCUGCCU---------------G--CGGAUGGACCGGA- -5'
31810 5' -58.4 NC_006938.1 + 33812 0.66 0.542644
Target:  5'- aUGCCGGACGucgguggcagguaGACGCCgcccuucuccuugACCUGGUg- -3'
miRNA:   3'- gAUGGUCUGC-------------CUGCGGa------------UGGACCGga -5'
31810 5' -58.4 NC_006938.1 + 3508 0.67 0.537446
Target:  5'- -gACCAGAUcGACGCg-GCCUGGUa- -3'
miRNA:   3'- gaUGGUCUGcCUGCGgaUGGACCGga -5'
31810 5' -58.4 NC_006938.1 + 26132 0.67 0.537446
Target:  5'- -aGCCGGuACGGGauCCacCCUGGCCUg -3'
miRNA:   3'- gaUGGUC-UGCCUgcGGauGGACCGGA- -5'
31810 5' -58.4 NC_006938.1 + 18508 0.67 0.536408
Target:  5'- uCUACCGgccggacGACGGugGCCU-CUgggcGGCCc -3'
miRNA:   3'- -GAUGGU-------CUGCCugCGGAuGGa---CCGGa -5'
31810 5' -58.4 NC_006938.1 + 44414 0.67 0.536408
Target:  5'- -gGCCGGugGGGCauucagcgcggcaGCUaacccaacggACCUGGCCUu -3'
miRNA:   3'- gaUGGUCugCCUG-------------CGGa---------UGGACCGGA- -5'
31810 5' -58.4 NC_006938.1 + 670 0.67 0.527101
Target:  5'- --uCCAGGCGGA-GCCUcucggcACC-GGCCUc -3'
miRNA:   3'- gauGGUCUGCCUgCGGA------UGGaCCGGA- -5'
31810 5' -58.4 NC_006938.1 + 37467 0.67 0.506643
Target:  5'- --gUCAGGCGaucGACGUCUGCCUGuGUCUu -3'
miRNA:   3'- gauGGUCUGC---CUGCGGAUGGAC-CGGA- -5'
31810 5' -58.4 NC_006938.1 + 19415 0.67 0.506643
Target:  5'- uUGCCAGGCGGGugaaGCCgaguaCUGGCa- -3'
miRNA:   3'- gAUGGUCUGCCUg---CGGaug--GACCGga -5'
31810 5' -58.4 NC_006938.1 + 58571 0.67 0.496542
Target:  5'- -cAUCGGugGGGCGCUcgUGgaUGGCCUg -3'
miRNA:   3'- gaUGGUCugCCUGCGG--AUggACCGGA- -5'
31810 5' -58.4 NC_006938.1 + 20441 0.67 0.496542
Target:  5'- cCUGgCGGGCGGACGC-UGCCaGGUg- -3'
miRNA:   3'- -GAUgGUCUGCCUGCGgAUGGaCCGga -5'
31810 5' -58.4 NC_006938.1 + 39239 0.67 0.486532
Target:  5'- uUGCCu-GCGGACGCCUggcguuccACCUcGGUCg -3'
miRNA:   3'- gAUGGucUGCCUGCGGA--------UGGA-CCGGa -5'
31810 5' -58.4 NC_006938.1 + 59507 0.68 0.476619
Target:  5'- uCUGgCGcGGCGGAUGCCaGCCUcguccgGGCCa -3'
miRNA:   3'- -GAUgGU-CUGCCUGCGGaUGGA------CCGGa -5'
31810 5' -58.4 NC_006938.1 + 14332 0.68 0.463883
Target:  5'- -cGCCAGACGGAgcacccuccggcCGCCUGugucuuugucugucCCUGGgCa -3'
miRNA:   3'- gaUGGUCUGCCU------------GCGGAU--------------GGACCgGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.