Results 1 - 20 of 30 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31810 | 5' | -58.4 | NC_006938.1 | + | 20174 | 0.66 | 0.600729 |
Target: 5'- aUGCCAGACuGGAUGaUCaGCUUGGCg- -3' miRNA: 3'- gAUGGUCUG-CCUGC-GGaUGGACCGga -5' |
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31810 | 5' | -58.4 | NC_006938.1 | + | 29281 | 0.66 | 0.600729 |
Target: 5'- -gGCCAG-CGGAUcCuCUACCUGGUg- -3' miRNA: 3'- gaUGGUCuGCCUGcG-GAUGGACCGga -5' |
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31810 | 5' | -58.4 | NC_006938.1 | + | 34596 | 0.66 | 0.590073 |
Target: 5'- cCUGCC-GACGGACGCCgacGCCaaGUa- -3' miRNA: 3'- -GAUGGuCUGCCUGCGGa--UGGacCGga -5' |
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31810 | 5' | -58.4 | NC_006938.1 | + | 29705 | 0.66 | 0.590073 |
Target: 5'- gUGCCAG-CGGGCGCgggUGCa-GGCCg -3' miRNA: 3'- gAUGGUCuGCCUGCGg--AUGgaCCGGa -5' |
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31810 | 5' | -58.4 | NC_006938.1 | + | 7549 | 0.66 | 0.590073 |
Target: 5'- gCUACgCggGGACGGGCaagaccacgcugGCCaagcACCUGGCCg -3' miRNA: 3'- -GAUG-G--UCUGCCUG------------CGGa---UGGACCGGa -5' |
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31810 | 5' | -58.4 | NC_006938.1 | + | 27329 | 0.66 | 0.590073 |
Target: 5'- --cCCAGACGGGCGag-ACgCUGGUCc -3' miRNA: 3'- gauGGUCUGCCUGCggaUG-GACCGGa -5' |
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31810 | 5' | -58.4 | NC_006938.1 | + | 57690 | 0.66 | 0.583695 |
Target: 5'- --uCCAGGCGGAgaagagcaauuucucCgaGUCUGCUUGGCCUc -3' miRNA: 3'- gauGGUCUGCCU---------------G--CGGAUGGACCGGA- -5' |
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31810 | 5' | -58.4 | NC_006938.1 | + | 33812 | 0.66 | 0.542644 |
Target: 5'- aUGCCGGACGucgguggcagguaGACGCCgcccuucuccuugACCUGGUg- -3' miRNA: 3'- gAUGGUCUGC-------------CUGCGGa------------UGGACCGga -5' |
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31810 | 5' | -58.4 | NC_006938.1 | + | 3508 | 0.67 | 0.537446 |
Target: 5'- -gACCAGAUcGACGCg-GCCUGGUa- -3' miRNA: 3'- gaUGGUCUGcCUGCGgaUGGACCGga -5' |
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31810 | 5' | -58.4 | NC_006938.1 | + | 26132 | 0.67 | 0.537446 |
Target: 5'- -aGCCGGuACGGGauCCacCCUGGCCUg -3' miRNA: 3'- gaUGGUC-UGCCUgcGGauGGACCGGA- -5' |
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31810 | 5' | -58.4 | NC_006938.1 | + | 18508 | 0.67 | 0.536408 |
Target: 5'- uCUACCGgccggacGACGGugGCCU-CUgggcGGCCc -3' miRNA: 3'- -GAUGGU-------CUGCCugCGGAuGGa---CCGGa -5' |
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31810 | 5' | -58.4 | NC_006938.1 | + | 44414 | 0.67 | 0.536408 |
Target: 5'- -gGCCGGugGGGCauucagcgcggcaGCUaacccaacggACCUGGCCUu -3' miRNA: 3'- gaUGGUCugCCUG-------------CGGa---------UGGACCGGA- -5' |
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31810 | 5' | -58.4 | NC_006938.1 | + | 670 | 0.67 | 0.527101 |
Target: 5'- --uCCAGGCGGA-GCCUcucggcACC-GGCCUc -3' miRNA: 3'- gauGGUCUGCCUgCGGA------UGGaCCGGA- -5' |
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31810 | 5' | -58.4 | NC_006938.1 | + | 37467 | 0.67 | 0.506643 |
Target: 5'- --gUCAGGCGaucGACGUCUGCCUGuGUCUu -3' miRNA: 3'- gauGGUCUGC---CUGCGGAUGGAC-CGGA- -5' |
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31810 | 5' | -58.4 | NC_006938.1 | + | 19415 | 0.67 | 0.506643 |
Target: 5'- uUGCCAGGCGGGugaaGCCgaguaCUGGCa- -3' miRNA: 3'- gAUGGUCUGCCUg---CGGaug--GACCGga -5' |
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31810 | 5' | -58.4 | NC_006938.1 | + | 58571 | 0.67 | 0.496542 |
Target: 5'- -cAUCGGugGGGCGCUcgUGgaUGGCCUg -3' miRNA: 3'- gaUGGUCugCCUGCGG--AUggACCGGA- -5' |
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31810 | 5' | -58.4 | NC_006938.1 | + | 20441 | 0.67 | 0.496542 |
Target: 5'- cCUGgCGGGCGGACGC-UGCCaGGUg- -3' miRNA: 3'- -GAUgGUCUGCCUGCGgAUGGaCCGga -5' |
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31810 | 5' | -58.4 | NC_006938.1 | + | 39239 | 0.67 | 0.486532 |
Target: 5'- uUGCCu-GCGGACGCCUggcguuccACCUcGGUCg -3' miRNA: 3'- gAUGGucUGCCUGCGGA--------UGGA-CCGGa -5' |
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31810 | 5' | -58.4 | NC_006938.1 | + | 59507 | 0.68 | 0.476619 |
Target: 5'- uCUGgCGcGGCGGAUGCCaGCCUcguccgGGCCa -3' miRNA: 3'- -GAUgGU-CUGCCUGCGGaUGGA------CCGGa -5' |
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31810 | 5' | -58.4 | NC_006938.1 | + | 14332 | 0.68 | 0.463883 |
Target: 5'- -cGCCAGACGGAgcacccuccggcCGCCUGugucuuugucugucCCUGGgCa -3' miRNA: 3'- gaUGGUCUGCCU------------GCGGAU--------------GGACCgGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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