miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31815 3' -54.6 NC_006938.1 + 18041 0.66 0.806096
Target:  5'- cGGCGucaaggucgacgaggACC-GGCucauGGAGGUCGAGAuccgagcgacgaAGGAg -3'
miRNA:   3'- -CCGU---------------UGGaCCG----CCUCUAGCUCU------------UCCU- -5'
31815 3' -54.6 NC_006938.1 + 1715 0.66 0.782956
Target:  5'- aGGCuucaccGACUUGGCGGAG---GAGuAGGAu -3'
miRNA:   3'- -CCG------UUGGACCGCCUCuagCUCuUCCU- -5'
31815 3' -54.6 NC_006938.1 + 23258 0.67 0.762989
Target:  5'- cGGCGACCgaGGCGGAcGUCcAGGAcGAc -3'
miRNA:   3'- -CCGUUGGa-CCGCCUcUAGcUCUUcCU- -5'
31815 3' -54.6 NC_006938.1 + 2139 0.67 0.759946
Target:  5'- uGGCAGCCgucaacuggGGCGacgugcacgccuccGAGAUCGAcGAAGa- -3'
miRNA:   3'- -CCGUUGGa--------CCGC--------------CUCUAGCU-CUUCcu -5'
31815 3' -54.6 NC_006938.1 + 27813 0.67 0.752802
Target:  5'- cGCGuacGCgUGGCGGAagagGAUCGugccaagcaaagAGAAGGAg -3'
miRNA:   3'- cCGU---UGgACCGCCU----CUAGC------------UCUUCCU- -5'
31815 3' -54.6 NC_006938.1 + 27460 0.67 0.742494
Target:  5'- aGCGGCCgaGGagcacgaGGAGAUgGAGAGcGGAu -3'
miRNA:   3'- cCGUUGGa-CCg------CCUCUAgCUCUU-CCU- -5'
31815 3' -54.6 NC_006938.1 + 24064 0.69 0.646117
Target:  5'- gGGCAaggaGCgC-GGCGGAuucAUCGGGAGGGAc -3'
miRNA:   3'- -CCGU----UG-GaCCGCCUc--UAGCUCUUCCU- -5'
31815 3' -54.6 NC_006938.1 + 51371 0.69 0.628658
Target:  5'- uGGCGAgCUGGCGGAacgcgccaccggccuGGUUGAGcuGGu -3'
miRNA:   3'- -CCGUUgGACCGCCU---------------CUAGCUCuuCCu -5'
31815 3' -54.6 NC_006938.1 + 11576 0.69 0.601408
Target:  5'- gGGCGGCaggUGGCGGAGGccuuuggcuuccgUCGGGAGaagcuGGAc -3'
miRNA:   3'- -CCGUUGg--ACCGCCUCU-------------AGCUCUU-----CCU- -5'
31815 3' -54.6 NC_006938.1 + 30592 0.71 0.486072
Target:  5'- gGGCGGCUacaagGGCugGGAGAcCGAGGAGGu -3'
miRNA:   3'- -CCGUUGGa----CCG--CCUCUaGCUCUUCCu -5'
31815 3' -54.6 NC_006938.1 + 8982 0.71 0.47497
Target:  5'- uGGCGGCCUGgacGCGGcccgcuggcaugaAGcgcauGUCGAGGAGGAu -3'
miRNA:   3'- -CCGUUGGAC---CGCC-------------UC-----UAGCUCUUCCU- -5'
31815 3' -54.6 NC_006938.1 + 52212 0.73 0.390298
Target:  5'- cGGCGGCCUguuugguggaGGCGGAGGgcucuUUGGuGGAGGAg -3'
miRNA:   3'- -CCGUUGGA----------CCGCCUCU-----AGCU-CUUCCU- -5'
31815 3' -54.6 NC_006938.1 + 17230 1.11 0.001033
Target:  5'- gGGCAACCUGGCGGAGAUCGAGAAGGAg -3'
miRNA:   3'- -CCGUUGGACCGCCUCUAGCUCUUCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.