miRNA display CGI


Results 21 - 34 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31816 5' -58.6 NC_006938.1 + 59592 0.7 0.313849
Target:  5'- --aGGCUGGCAuccGCCgcGCCAGACAgguucGUCg -3'
miRNA:   3'- aggUCGACCGU---CGG--CGGUCUGUa----CAG- -5'
31816 5' -58.6 NC_006938.1 + 63616 0.7 0.313849
Target:  5'- uUCCAG--GGCAGCUGCCAGuGCG-GUCc -3'
miRNA:   3'- -AGGUCgaCCGUCGGCGGUC-UGUaCAG- -5'
31816 5' -58.6 NC_006938.1 + 29879 0.7 0.298158
Target:  5'- gUCCgGGCUGGCcccucGGCCgaGCCGGAuggcugcCAUGUCg -3'
miRNA:   3'- -AGG-UCGACCG-----UCGG--CGGUCU-------GUACAG- -5'
31816 5' -58.6 NC_006938.1 + 6874 0.71 0.26393
Target:  5'- gUCGGCcuUGGCcucGCCGCCAGcgacCAUGUCa -3'
miRNA:   3'- aGGUCG--ACCGu--CGGCGGUCu---GUACAG- -5'
31816 5' -58.6 NC_006938.1 + 18278 0.68 0.388045
Target:  5'- gUUCAGCUGGUguccGGCCGCgCGGAgGgcGUCc -3'
miRNA:   3'- -AGGUCGACCG----UCGGCG-GUCUgUa-CAG- -5'
31816 5' -58.6 NC_006938.1 + 25896 0.68 0.433958
Target:  5'- aCguGCUGGCAGCCGUUGGcCAcGaUCg -3'
miRNA:   3'- aGguCGACCGUCGGCGGUCuGUaC-AG- -5'
31816 5' -58.6 NC_006938.1 + 17433 0.68 0.433958
Target:  5'- cUCCGGUgcgaacauUGGCAGCUGCaucaGGGCuUGUUc -3'
miRNA:   3'- -AGGUCG--------ACCGUCGGCGg---UCUGuACAG- -5'
31816 5' -58.6 NC_006938.1 + 52211 0.67 0.492974
Target:  5'- gCCAGCUGGgucaGGUCGgCCAGcagggaGCGUGUg -3'
miRNA:   3'- aGGUCGACCg---UCGGC-GGUC------UGUACAg -5'
31816 5' -58.6 NC_006938.1 + 40569 0.66 0.513462
Target:  5'- gUUCGGCUGGCccuggucGuCCGUCGGAggaGUGUCg -3'
miRNA:   3'- -AGGUCGACCGu------C-GGCGGUCUg--UACAG- -5'
31816 5' -58.6 NC_006938.1 + 20533 0.66 0.522795
Target:  5'- aUCAGCaccUGGCAGCguccgccCGCCAGGCAc--- -3'
miRNA:   3'- aGGUCG---ACCGUCG-------GCGGUCUGUacag -5'
31816 5' -58.6 NC_006938.1 + 41580 0.66 0.544816
Target:  5'- -gCGGCUGcGCGGCgGCCuGGGCAaaGUCc -3'
miRNA:   3'- agGUCGAC-CGUCGgCGG-UCUGUa-CAG- -5'
31816 5' -58.6 NC_006938.1 + 32013 0.66 0.554347
Target:  5'- gCCAGCUcGaGCAGCuUGUCAGAguacuugcggacgUAUGUCa -3'
miRNA:   3'- aGGUCGA-C-CGUCG-GCGGUCU-------------GUACAG- -5'
31816 5' -58.6 NC_006938.1 + 53279 0.66 0.555409
Target:  5'- cUCCAGgUGGgucugcaGGCUGCCAGuuauUGUCu -3'
miRNA:   3'- -AGGUCgACCg------UCGGCGGUCugu-ACAG- -5'
31816 5' -58.6 NC_006938.1 + 18584 0.73 0.198215
Target:  5'- gUCCGGCcGGUAgaugcGCCGCCAGAUcggggcgAUGUCc -3'
miRNA:   3'- -AGGUCGaCCGU-----CGGCGGUCUG-------UACAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.