miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31816 5' -58.6 NC_006938.1 + 17370 1.09 0.000481
Target:  5'- gUCCAGCUGGCAGCCGCCAGACAUGUCc -3'
miRNA:   3'- -AGGUCGACCGUCGGCGGUCUGUACAG- -5'
31816 5' -58.6 NC_006938.1 + 50218 0.66 0.555409
Target:  5'- aCCGGCUGGCuuuGUCGacaccgccauCCAGGCcgggGUCc -3'
miRNA:   3'- aGGUCGACCGu--CGGC----------GGUCUGua--CAG- -5'
31816 5' -58.6 NC_006938.1 + 34691 0.66 0.555409
Target:  5'- cCCAGaagGGCggacAGCUGCUGGACuccGUGUCc -3'
miRNA:   3'- aGGUCga-CCG----UCGGCGGUCUG---UACAG- -5'
31816 5' -58.6 NC_006938.1 + 2270 0.66 0.555409
Target:  5'- uUCCGGUcGcGCGGCCaCCAcGACAUGa- -3'
miRNA:   3'- -AGGUCGaC-CGUCGGcGGU-CUGUACag -5'
31816 5' -58.6 NC_006938.1 + 5518 0.66 0.554347
Target:  5'- cCCGccGCUGGCAGCaauGCCAaggccguccucgaGACAcagGUCa -3'
miRNA:   3'- aGGU--CGACCGUCGg--CGGU-------------CUGUa--CAG- -5'
31816 5' -58.6 NC_006938.1 + 36745 0.66 0.523836
Target:  5'- aCCGGCUGGCucgacAGCUugGuCCAGGCGUcGUg -3'
miRNA:   3'- aGGUCGACCG-----UCGG--C-GGUCUGUA-CAg -5'
31816 5' -58.6 NC_006938.1 + 14613 0.66 0.523836
Target:  5'- gCCAGaUGGCuGGCUGCC-GACG-GUCg -3'
miRNA:   3'- aGGUCgACCG-UCGGCGGuCUGUaCAG- -5'
31816 5' -58.6 NC_006938.1 + 45470 0.66 0.513462
Target:  5'- aCgGGUUGGCAGUCgcggguGCCGGACuuacaGUCg -3'
miRNA:   3'- aGgUCGACCGUCGG------CGGUCUGua---CAG- -5'
31816 5' -58.6 NC_006938.1 + 26098 0.66 0.503172
Target:  5'- cCCGGCaaGCAGCCGaCAGACcUGa- -3'
miRNA:   3'- aGGUCGacCGUCGGCgGUCUGuACag -5'
31816 5' -58.6 NC_006938.1 + 4719 0.67 0.482871
Target:  5'- cUCCggaagaAGCUGGCAGUCGCagAGACGa--- -3'
miRNA:   3'- -AGG------UCGACCGUCGGCGg-UCUGUacag -5'
31816 5' -58.6 NC_006938.1 + 60808 0.67 0.472869
Target:  5'- aCCGGCUGGUgucuGGUCGaCCAcGACccUGUCu -3'
miRNA:   3'- aGGUCGACCG----UCGGC-GGU-CUGu-ACAG- -5'
31816 5' -58.6 NC_006938.1 + 8211 0.72 0.250902
Target:  5'- aCCAGCUuauauGCGGCCGCaacaAGACGcGUCg -3'
miRNA:   3'- aGGUCGAc----CGUCGGCGg---UCUGUaCAG- -5'
31816 5' -58.6 NC_006938.1 + 2134 0.69 0.337334
Target:  5'- -gCAGgUGGCAGCCGUCAacuggggcGACGUG-Ca -3'
miRNA:   3'- agGUCgACCGUCGGCGGU--------CUGUACaG- -5'
31816 5' -58.6 NC_006938.1 + 52139 0.69 0.337334
Target:  5'- cCCAGCUGGCAGCCaaCCAGcuccuGCAg--- -3'
miRNA:   3'- aGGUCGACCGUCGGc-GGUC-----UGUacag -5'
31816 5' -58.6 NC_006938.1 + 20098 0.69 0.362073
Target:  5'- aUCCAGuCUGGCAuCCGCC--GCGUgGUCu -3'
miRNA:   3'- -AGGUC-GACCGUcGGCGGucUGUA-CAG- -5'
31816 5' -58.6 NC_006938.1 + 35735 0.68 0.388045
Target:  5'- gUCCAGCUGGaccugacccuucCGGCCGCC-GACcugcugcaGUCg -3'
miRNA:   3'- -AGGUCGACC------------GUCGGCGGuCUGua------CAG- -5'
31816 5' -58.6 NC_006938.1 + 2880 0.67 0.472869
Target:  5'- gUCgCGaCUGGCgGGCCGCCGGACcUGa- -3'
miRNA:   3'- -AG-GUcGACCG-UCGGCGGUCUGuACag -5'
31816 5' -58.6 NC_006938.1 + 49473 0.67 0.472869
Target:  5'- aUCCAGUcGGCcGCCGUCGacGACAccGUCu -3'
miRNA:   3'- -AGGUCGaCCGuCGGCGGU--CUGUa-CAG- -5'
31816 5' -58.6 NC_006938.1 + 18584 0.73 0.198215
Target:  5'- gUCCGGCcGGUAgaugcGCCGCCAGAUcggggcgAUGUCc -3'
miRNA:   3'- -AGGUCGaCCGU-----CGGCGGUCUG-------UACAG- -5'
31816 5' -58.6 NC_006938.1 + 32013 0.66 0.554347
Target:  5'- gCCAGCUcGaGCAGCuUGUCAGAguacuugcggacgUAUGUCa -3'
miRNA:   3'- aGGUCGA-C-CGUCG-GCGGUCU-------------GUACAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.