miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31816 5' -58.6 NC_006938.1 + 17370 1.09 0.000481
Target:  5'- gUCCAGCUGGCAGCCGCCAGACAUGUCc -3'
miRNA:   3'- -AGGUCGACCGUCGGCGGUCUGUACAG- -5'
31816 5' -58.6 NC_006938.1 + 18584 0.73 0.198215
Target:  5'- gUCCGGCcGGUAgaugcGCCGCCAGAUcggggcgAUGUCc -3'
miRNA:   3'- -AGGUCGaCCGU-----CGGCGGUCUG-------UACAG- -5'
31816 5' -58.6 NC_006938.1 + 8211 0.72 0.250902
Target:  5'- aCCAGCUuauauGCGGCCGCaacaAGACGcGUCg -3'
miRNA:   3'- aGGUCGAc----CGUCGGCGg---UCUGUaCAG- -5'
31816 5' -58.6 NC_006938.1 + 6874 0.71 0.26393
Target:  5'- gUCGGCcuUGGCcucGCCGCCAGcgacCAUGUCa -3'
miRNA:   3'- aGGUCG--ACCGu--CGGCGGUCu---GUACAG- -5'
31816 5' -58.6 NC_006938.1 + 29879 0.7 0.298158
Target:  5'- gUCCgGGCUGGCcccucGGCCgaGCCGGAuggcugcCAUGUCg -3'
miRNA:   3'- -AGG-UCGACCG-----UCGG--CGGUCU-------GUACAG- -5'
31816 5' -58.6 NC_006938.1 + 63616 0.7 0.313849
Target:  5'- uUCCAG--GGCAGCUGCCAGuGCG-GUCc -3'
miRNA:   3'- -AGGUCgaCCGUCGGCGGUC-UGUaCAG- -5'
31816 5' -58.6 NC_006938.1 + 59592 0.7 0.313849
Target:  5'- --aGGCUGGCAuccGCCgcGCCAGACAgguucGUCg -3'
miRNA:   3'- aggUCGACCGU---CGG--CGGUCUGUa----CAG- -5'
31816 5' -58.6 NC_006938.1 + 2134 0.69 0.337334
Target:  5'- -gCAGgUGGCAGCCGUCAacuggggcGACGUG-Ca -3'
miRNA:   3'- agGUCgACCGUCGGCGGU--------CUGUACaG- -5'
31816 5' -58.6 NC_006938.1 + 52139 0.69 0.337334
Target:  5'- cCCAGCUGGCAGCCaaCCAGcuccuGCAg--- -3'
miRNA:   3'- aGGUCGACCGUCGGc-GGUC-----UGUacag -5'
31816 5' -58.6 NC_006938.1 + 20098 0.69 0.362073
Target:  5'- aUCCAGuCUGGCAuCCGCC--GCGUgGUCu -3'
miRNA:   3'- -AGGUC-GACCGUcGGCGGucUGUA-CAG- -5'
31816 5' -58.6 NC_006938.1 + 29703 0.69 0.370595
Target:  5'- gCCAGCgggcgcGGguGCagGCCGGACAguccagGUCg -3'
miRNA:   3'- aGGUCGa-----CCguCGg-CGGUCUGUa-----CAG- -5'
31816 5' -58.6 NC_006938.1 + 21643 0.69 0.379253
Target:  5'- aCCAGCuUGGCgAGCCGCUccguccGACccuGUGUCc -3'
miRNA:   3'- aGGUCG-ACCG-UCGGCGGu-----CUG---UACAG- -5'
31816 5' -58.6 NC_006938.1 + 18278 0.68 0.388045
Target:  5'- gUUCAGCUGGUguccGGCCGCgCGGAgGgcGUCc -3'
miRNA:   3'- -AGGUCGACCG----UCGGCG-GUCUgUa-CAG- -5'
31816 5' -58.6 NC_006938.1 + 35735 0.68 0.388045
Target:  5'- gUCCAGCUGGaccugacccuucCGGCCGCC-GACcugcugcaGUCg -3'
miRNA:   3'- -AGGUCGACC------------GUCGGCGGuCUGua------CAG- -5'
31816 5' -58.6 NC_006938.1 + 17433 0.68 0.433958
Target:  5'- cUCCGGUgcgaacauUGGCAGCUGCaucaGGGCuUGUUc -3'
miRNA:   3'- -AGGUCG--------ACCGUCGGCGg---UCUGuACAG- -5'
31816 5' -58.6 NC_006938.1 + 25896 0.68 0.433958
Target:  5'- aCguGCUGGCAGCCGUUGGcCAcGaUCg -3'
miRNA:   3'- aGguCGACCGUCGGCGGUCuGUaC-AG- -5'
31816 5' -58.6 NC_006938.1 + 2880 0.67 0.472869
Target:  5'- gUCgCGaCUGGCgGGCCGCCGGACcUGa- -3'
miRNA:   3'- -AG-GUcGACCG-UCGGCGGUCUGuACag -5'
31816 5' -58.6 NC_006938.1 + 49473 0.67 0.472869
Target:  5'- aUCCAGUcGGCcGCCGUCGacGACAccGUCu -3'
miRNA:   3'- -AGGUCGaCCGuCGGCGGU--CUGUa-CAG- -5'
31816 5' -58.6 NC_006938.1 + 60808 0.67 0.472869
Target:  5'- aCCGGCUGGUgucuGGUCGaCCAcGACccUGUCu -3'
miRNA:   3'- aGGUCGACCG----UCGGC-GGU-CUGu-ACAG- -5'
31816 5' -58.6 NC_006938.1 + 4719 0.67 0.482871
Target:  5'- cUCCggaagaAGCUGGCAGUCGCagAGACGa--- -3'
miRNA:   3'- -AGG------UCGACCGUCGGCGg-UCUGUacag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.