Results 21 - 40 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31827 | 3' | -57.2 | NC_006938.1 | + | 15875 | 0.68 | 0.571638 |
Target: 5'- uCCAuGAGCgGAGugGGCUCUgacacaccggccaGGUaCAUGUc -3' miRNA: 3'- -GGU-CUCG-CUCugCCGGGA-------------CCA-GUACG- -5' |
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31827 | 3' | -57.2 | NC_006938.1 | + | 59520 | 0.68 | 0.572695 |
Target: 5'- aCCGuGGCGaAGuCGGCCg-GGUCcgGCg -3' miRNA: 3'- -GGUcUCGC-UCuGCCGGgaCCAGuaCG- -5' |
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31827 | 3' | -57.2 | NC_006938.1 | + | 23694 | 0.67 | 0.582217 |
Target: 5'- gCCAGGGCGgcauGGccgagaugcucgaGCGcGCCCUGaGUgGUGCc -3' miRNA: 3'- -GGUCUCGC----UC-------------UGC-CGGGAC-CAgUACG- -5' |
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31827 | 3' | -57.2 | NC_006938.1 | + | 47960 | 0.67 | 0.583277 |
Target: 5'- aCguGGuCGGGuCGGCCgUGGUCGacUGCa -3' miRNA: 3'- -GguCUcGCUCuGCCGGgACCAGU--ACG- -5' |
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31827 | 3' | -57.2 | NC_006938.1 | + | 34367 | 0.67 | 0.583277 |
Target: 5'- aCGGAGU-AGAC-GCCCUGGcCcUGCg -3' miRNA: 3'- gGUCUCGcUCUGcCGGGACCaGuACG- -5' |
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31827 | 3' | -57.2 | NC_006938.1 | + | 55894 | 0.67 | 0.583277 |
Target: 5'- cCCAGAcagGCGAGAggguggGGCCUUGGUg--GCg -3' miRNA: 3'- -GGUCU---CGCUCUg-----CCGGGACCAguaCG- -5' |
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31827 | 3' | -57.2 | NC_006938.1 | + | 35329 | 0.67 | 0.583277 |
Target: 5'- aCGGAGUGuauCGGCCUgugcgaGGUCAUGa -3' miRNA: 3'- gGUCUCGCucuGCCGGGa-----CCAGUACg -5' |
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31827 | 3' | -57.2 | NC_006938.1 | + | 15231 | 0.67 | 0.583277 |
Target: 5'- uCCGGAGCGAcGACcGCCCcuccguuccgGGUCucGCg -3' miRNA: 3'- -GGUCUCGCU-CUGcCGGGa---------CCAGuaCG- -5' |
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31827 | 3' | -57.2 | NC_006938.1 | + | 5592 | 0.67 | 0.615222 |
Target: 5'- gCCAGcGGCGGGugGcgcGUCCUGGUgGUccucgGCg -3' miRNA: 3'- -GGUC-UCGCUCugC---CGGGACCAgUA-----CG- -5' |
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31827 | 3' | -57.2 | NC_006938.1 | + | 20217 | 0.67 | 0.625909 |
Target: 5'- gCCGuGAGCGAGGCaGGCUuCUGGagCA-GCu -3' miRNA: 3'- -GGU-CUCGCUCUG-CCGG-GACCa-GUaCG- -5' |
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31827 | 3' | -57.2 | NC_006938.1 | + | 28007 | 0.67 | 0.625909 |
Target: 5'- aCCAGAaggugauguuugGCGAGugGugcauggaGCUCUGGUUcgAUGCc -3' miRNA: 3'- -GGUCU------------CGCUCugC--------CGGGACCAG--UACG- -5' |
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31827 | 3' | -57.2 | NC_006938.1 | + | 19812 | 0.66 | 0.636602 |
Target: 5'- gUCGGgcAGCGGuGGCuGGUCCgGGUCcgGCg -3' miRNA: 3'- -GGUC--UCGCU-CUG-CCGGGaCCAGuaCG- -5' |
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31827 | 3' | -57.2 | NC_006938.1 | + | 7300 | 0.66 | 0.636602 |
Target: 5'- gCCGGAGCuccAGGCccuGCgCCUGGUCAacGCg -3' miRNA: 3'- -GGUCUCGc--UCUGc--CG-GGACCAGUa-CG- -5' |
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31827 | 3' | -57.2 | NC_006938.1 | + | 26386 | 0.66 | 0.651563 |
Target: 5'- uCCAGGGCGAGAgGccGCCCgagaucauccaCGUGCg -3' miRNA: 3'- -GGUCUCGCUCUgC--CGGGacca-------GUACG- -5' |
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31827 | 3' | -57.2 | NC_006938.1 | + | 40972 | 0.66 | 0.651563 |
Target: 5'- aUCGGAGCcuugaGAGACagGGCCgUgacaacguccuccgaGGUCGUGCc -3' miRNA: 3'- -GGUCUCG-----CUCUG--CCGGgA---------------CCAGUACG- -5' |
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31827 | 3' | -57.2 | NC_006938.1 | + | 42214 | 0.66 | 0.657966 |
Target: 5'- gCC-GAGCGAGAacGCCUgGGUCAcguUGCc -3' miRNA: 3'- -GGuCUCGCUCUgcCGGGaCCAGU---ACG- -5' |
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31827 | 3' | -57.2 | NC_006938.1 | + | 31011 | 0.66 | 0.66862 |
Target: 5'- aCGGAGUGAGAUGuacGCCCc-GUCGaGCa -3' miRNA: 3'- gGUCUCGCUCUGC---CGGGacCAGUaCG- -5' |
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31827 | 3' | -57.2 | NC_006938.1 | + | 12505 | 0.66 | 0.66862 |
Target: 5'- aCCGGAgagauccugGCGGGAcagcccCGGCCCgaGGuUCcgGCa -3' miRNA: 3'- -GGUCU---------CGCUCU------GCCGGGa-CC-AGuaCG- -5' |
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31827 | 3' | -57.2 | NC_006938.1 | + | 55509 | 0.66 | 0.66862 |
Target: 5'- uCUGGGGCGAGAa-GCCCaGGcCGccUGCg -3' miRNA: 3'- -GGUCUCGCUCUgcCGGGaCCaGU--ACG- -5' |
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31827 | 3' | -57.2 | NC_006938.1 | + | 41938 | 0.66 | 0.67924 |
Target: 5'- --cGAGCGGGGCa-CCCUGGUCucUGg -3' miRNA: 3'- gguCUCGCUCUGccGGGACCAGu-ACg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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