miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31827 3' -57.2 NC_006938.1 + 22410 1.14 0.000384
Target:  5'- cCCAGAGCGAGACGGCCCUGGUCAUGCg -3'
miRNA:   3'- -GGUCUCGCUCUGCCGGGACCAGUACG- -5'
31827 3' -57.2 NC_006938.1 + 36977 0.79 0.111128
Target:  5'- uUCGGAGCGcGGACGGCUCUGauccUCAUGCu -3'
miRNA:   3'- -GGUCUCGC-UCUGCCGGGACc---AGUACG- -5'
31827 3' -57.2 NC_006938.1 + 45922 0.77 0.15793
Target:  5'- aUCGGAGCcucggcggcgGAGACGGCCCagaaccUGGUCuAUGCc -3'
miRNA:   3'- -GGUCUCG----------CUCUGCCGGG------ACCAG-UACG- -5'
31827 3' -57.2 NC_006938.1 + 38720 0.76 0.175589
Target:  5'- gCCAGAGCG--GCGGCCa-GGUCAUGg -3'
miRNA:   3'- -GGUCUCGCucUGCCGGgaCCAGUACg -5'
31827 3' -57.2 NC_006938.1 + 17038 0.75 0.221838
Target:  5'- uCCAGuacaAGCGAG-CGGCCgaGGUCAUcgaGCa -3'
miRNA:   3'- -GGUC----UCGCUCuGCCGGgaCCAGUA---CG- -5'
31827 3' -57.2 NC_006938.1 + 1479 0.74 0.258151
Target:  5'- cCCgAGGGCGAGGUGGCCC-GGUacauucucaCAUGCg -3'
miRNA:   3'- -GG-UCUCGCUCUGCCGGGaCCA---------GUACG- -5'
31827 3' -57.2 NC_006938.1 + 21646 0.73 0.292006
Target:  5'- aCCAGGGCGAcGugGGCCgCgcgcgGGUCcaGCu -3'
miRNA:   3'- -GGUCUCGCU-CugCCGG-Ga----CCAGuaCG- -5'
31827 3' -57.2 NC_006938.1 + 40574 0.72 0.329235
Target:  5'- gCGGGGUucGGCuGGCCCUGGUCGUcCg -3'
miRNA:   3'- gGUCUCGcuCUG-CCGGGACCAGUAcG- -5'
31827 3' -57.2 NC_006938.1 + 6096 0.72 0.337089
Target:  5'- -aAGGaaGAGACGGCCCUGGcCGagGCa -3'
miRNA:   3'- ggUCUcgCUCUGCCGGGACCaGUa-CG- -5'
31827 3' -57.2 NC_006938.1 + 17813 0.71 0.369008
Target:  5'- cCCucauGAuCGAGGCGGCCCgcgccuaUGG-CAUGCg -3'
miRNA:   3'- -GGu---CUcGCUCUGCCGGG-------ACCaGUACG- -5'
31827 3' -57.2 NC_006938.1 + 12085 0.71 0.387033
Target:  5'- uUCGGAGCGAcgucGAC-GCCCUGGaUCA-GCu -3'
miRNA:   3'- -GGUCUCGCU----CUGcCGGGACC-AGUaCG- -5'
31827 3' -57.2 NC_006938.1 + 51409 0.7 0.403833
Target:  5'- gCCAGAGCugauGAGcuggaccACGGCCUgcacGGUCGUGg -3'
miRNA:   3'- -GGUCUCG----CUC-------UGCCGGGa---CCAGUACg -5'
31827 3' -57.2 NC_006938.1 + 15817 0.7 0.40473
Target:  5'- gCCAGAGagcuggcagaccUGGGACcaGGaCCUGGUCAUGUu -3'
miRNA:   3'- -GGUCUC------------GCUCUG--CCgGGACCAGUACG- -5'
31827 3' -57.2 NC_006938.1 + 20952 0.69 0.470484
Target:  5'- cCCAGAGCcugGAGAC-GCCgaGGUCucggGCc -3'
miRNA:   3'- -GGUCUCG---CUCUGcCGGgaCCAGua--CG- -5'
31827 3' -57.2 NC_006938.1 + 37937 0.69 0.480321
Target:  5'- gCCAGGGCGguGGAggcguCGGCUCUGGcgCGaGCa -3'
miRNA:   3'- -GGUCUCGC--UCU-----GCCGGGACCa-GUaCG- -5'
31827 3' -57.2 NC_006938.1 + 19038 0.69 0.510407
Target:  5'- aCCAGAcaaAGGCGGCCaUGGUCGcgGCg -3'
miRNA:   3'- -GGUCUcgcUCUGCCGGgACCAGUa-CG- -5'
31827 3' -57.2 NC_006938.1 + 27028 0.68 0.520612
Target:  5'- uCCGGAGgGAca-GGCCCaGGUCAcggGCc -3'
miRNA:   3'- -GGUCUCgCUcugCCGGGaCCAGUa--CG- -5'
31827 3' -57.2 NC_006938.1 + 48748 0.68 0.540213
Target:  5'- ---cAGCGuuguuccGGACGGCCUUGGUCGccuccacaucUGCg -3'
miRNA:   3'- ggucUCGC-------UCUGCCGGGACCAGU----------ACG- -5'
31827 3' -57.2 NC_006938.1 + 8538 0.68 0.541252
Target:  5'- cCCAGGGCagccAGugGGaCCacgucaUGGUCAUGg -3'
miRNA:   3'- -GGUCUCGc---UCugCC-GGg-----ACCAGUACg -5'
31827 3' -57.2 NC_006938.1 + 25714 0.68 0.562158
Target:  5'- aCGGAGC---GCGGCCCUucugGGUguaCGUGCg -3'
miRNA:   3'- gGUCUCGcucUGCCGGGA----CCA---GUACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.