Results 1 - 20 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31827 | 3' | -57.2 | NC_006938.1 | + | 1479 | 0.74 | 0.258151 |
Target: 5'- cCCgAGGGCGAGGUGGCCC-GGUacauucucaCAUGCg -3' miRNA: 3'- -GG-UCUCGCUCUGCCGGGaCCA---------GUACG- -5' |
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31827 | 3' | -57.2 | NC_006938.1 | + | 2990 | 0.66 | 0.688763 |
Target: 5'- cCCAGAGCGGaccugauggaccuGACGGaCC-GGUCAg-- -3' miRNA: 3'- -GGUCUCGCU-------------CUGCCgGGaCCAGUacg -5' |
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31827 | 3' | -57.2 | NC_006938.1 | + | 5592 | 0.67 | 0.615222 |
Target: 5'- gCCAGcGGCGGGugGcgcGUCCUGGUgGUccucgGCg -3' miRNA: 3'- -GGUC-UCGCUCugC---CGGGACCAgUA-----CG- -5' |
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31827 | 3' | -57.2 | NC_006938.1 | + | 6096 | 0.72 | 0.337089 |
Target: 5'- -aAGGaaGAGACGGCCCUGGcCGagGCa -3' miRNA: 3'- ggUCUcgCUCUGCCGGGACCaGUa-CG- -5' |
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31827 | 3' | -57.2 | NC_006938.1 | + | 7300 | 0.66 | 0.636602 |
Target: 5'- gCCGGAGCuccAGGCccuGCgCCUGGUCAacGCg -3' miRNA: 3'- -GGUCUCGc--UCUGc--CG-GGACCAGUa-CG- -5' |
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31827 | 3' | -57.2 | NC_006938.1 | + | 8538 | 0.68 | 0.541252 |
Target: 5'- cCCAGGGCagccAGugGGaCCacgucaUGGUCAUGg -3' miRNA: 3'- -GGUCUCGc---UCugCC-GGg-----ACCAGUACg -5' |
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31827 | 3' | -57.2 | NC_006938.1 | + | 12085 | 0.71 | 0.387033 |
Target: 5'- uUCGGAGCGAcgucGAC-GCCCUGGaUCA-GCu -3' miRNA: 3'- -GGUCUCGCU----CUGcCGGGACC-AGUaCG- -5' |
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31827 | 3' | -57.2 | NC_006938.1 | + | 12505 | 0.66 | 0.66862 |
Target: 5'- aCCGGAgagauccugGCGGGAcagcccCGGCCCgaGGuUCcgGCa -3' miRNA: 3'- -GGUCU---------CGCUCU------GCCGGGa-CC-AGuaCG- -5' |
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31827 | 3' | -57.2 | NC_006938.1 | + | 15231 | 0.67 | 0.583277 |
Target: 5'- uCCGGAGCGAcGACcGCCCcuccguuccgGGUCucGCg -3' miRNA: 3'- -GGUCUCGCU-CUGcCGGGa---------CCAGuaCG- -5' |
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31827 | 3' | -57.2 | NC_006938.1 | + | 15817 | 0.7 | 0.40473 |
Target: 5'- gCCAGAGagcuggcagaccUGGGACcaGGaCCUGGUCAUGUu -3' miRNA: 3'- -GGUCUC------------GCUCUG--CCgGGACCAGUACG- -5' |
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31827 | 3' | -57.2 | NC_006938.1 | + | 15875 | 0.68 | 0.571638 |
Target: 5'- uCCAuGAGCgGAGugGGCUCUgacacaccggccaGGUaCAUGUc -3' miRNA: 3'- -GGU-CUCG-CUCugCCGGGA-------------CCA-GUACG- -5' |
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31827 | 3' | -57.2 | NC_006938.1 | + | 17038 | 0.75 | 0.221838 |
Target: 5'- uCCAGuacaAGCGAG-CGGCCgaGGUCAUcgaGCa -3' miRNA: 3'- -GGUC----UCGCUCuGCCGGgaCCAGUA---CG- -5' |
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31827 | 3' | -57.2 | NC_006938.1 | + | 17813 | 0.71 | 0.369008 |
Target: 5'- cCCucauGAuCGAGGCGGCCCgcgccuaUGG-CAUGCg -3' miRNA: 3'- -GGu---CUcGCUCUGCCGGG-------ACCaGUACG- -5' |
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31827 | 3' | -57.2 | NC_006938.1 | + | 19038 | 0.69 | 0.510407 |
Target: 5'- aCCAGAcaaAGGCGGCCaUGGUCGcgGCg -3' miRNA: 3'- -GGUCUcgcUCUGCCGGgACCAGUa-CG- -5' |
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31827 | 3' | -57.2 | NC_006938.1 | + | 19812 | 0.66 | 0.636602 |
Target: 5'- gUCGGgcAGCGGuGGCuGGUCCgGGUCcgGCg -3' miRNA: 3'- -GGUC--UCGCU-CUG-CCGGGaCCAGuaCG- -5' |
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31827 | 3' | -57.2 | NC_006938.1 | + | 20217 | 0.67 | 0.625909 |
Target: 5'- gCCGuGAGCGAGGCaGGCUuCUGGagCA-GCu -3' miRNA: 3'- -GGU-CUCGCUCUG-CCGG-GACCa-GUaCG- -5' |
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31827 | 3' | -57.2 | NC_006938.1 | + | 20952 | 0.69 | 0.470484 |
Target: 5'- cCCAGAGCcugGAGAC-GCCgaGGUCucggGCc -3' miRNA: 3'- -GGUCUCG---CUCUGcCGGgaCCAGua--CG- -5' |
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31827 | 3' | -57.2 | NC_006938.1 | + | 21646 | 0.73 | 0.292006 |
Target: 5'- aCCAGGGCGAcGugGGCCgCgcgcgGGUCcaGCu -3' miRNA: 3'- -GGUCUCGCU-CugCCGG-Ga----CCAGuaCG- -5' |
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31827 | 3' | -57.2 | NC_006938.1 | + | 22410 | 1.14 | 0.000384 |
Target: 5'- cCCAGAGCGAGACGGCCCUGGUCAUGCg -3' miRNA: 3'- -GGUCUCGCUCUGCCGGGACCAGUACG- -5' |
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31827 | 3' | -57.2 | NC_006938.1 | + | 23694 | 0.67 | 0.582217 |
Target: 5'- gCCAGGGCGgcauGGccgagaugcucgaGCGcGCCCUGaGUgGUGCc -3' miRNA: 3'- -GGUCUCGC----UC-------------UGC-CGGGAC-CAgUACG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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