miRNA display CGI


Results 1 - 20 of 41 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31827 3' -57.2 NC_006938.1 + 2990 0.66 0.688763
Target:  5'- cCCAGAGCGGaccugauggaccuGACGGaCC-GGUCAg-- -3'
miRNA:   3'- -GGUCUCGCU-------------CUGCCgGGaCCAGUacg -5'
31827 3' -57.2 NC_006938.1 + 25714 0.68 0.562158
Target:  5'- aCGGAGC---GCGGCCCUucugGGUguaCGUGCg -3'
miRNA:   3'- gGUCUCGcucUGCCGGGA----CCA---GUACG- -5'
31827 3' -57.2 NC_006938.1 + 23694 0.67 0.582217
Target:  5'- gCCAGGGCGgcauGGccgagaugcucgaGCGcGCCCUGaGUgGUGCc -3'
miRNA:   3'- -GGUCUCGC----UC-------------UGC-CGGGAC-CAgUACG- -5'
31827 3' -57.2 NC_006938.1 + 35329 0.67 0.583277
Target:  5'- aCGGAGUGuauCGGCCUgugcgaGGUCAUGa -3'
miRNA:   3'- gGUCUCGCucuGCCGGGa-----CCAGUACg -5'
31827 3' -57.2 NC_006938.1 + 20217 0.67 0.625909
Target:  5'- gCCGuGAGCGAGGCaGGCUuCUGGagCA-GCu -3'
miRNA:   3'- -GGU-CUCGCUCUG-CCGG-GACCa-GUaCG- -5'
31827 3' -57.2 NC_006938.1 + 28007 0.67 0.625909
Target:  5'- aCCAGAaggugauguuugGCGAGugGugcauggaGCUCUGGUUcgAUGCc -3'
miRNA:   3'- -GGUCU------------CGCUCugC--------CGGGACCAG--UACG- -5'
31827 3' -57.2 NC_006938.1 + 26386 0.66 0.651563
Target:  5'- uCCAGGGCGAGAgGccGCCCgagaucauccaCGUGCg -3'
miRNA:   3'- -GGUCUCGCUCUgC--CGGGacca-------GUACG- -5'
31827 3' -57.2 NC_006938.1 + 12505 0.66 0.66862
Target:  5'- aCCGGAgagauccugGCGGGAcagcccCGGCCCgaGGuUCcgGCa -3'
miRNA:   3'- -GGUCU---------CGCUCU------GCCGGGa-CC-AGuaCG- -5'
31827 3' -57.2 NC_006938.1 + 41938 0.66 0.67924
Target:  5'- --cGAGCGGGGCa-CCCUGGUCucUGg -3'
miRNA:   3'- gguCUCGCUCUGccGGGACCAGu-ACg -5'
31827 3' -57.2 NC_006938.1 + 8538 0.68 0.541252
Target:  5'- cCCAGGGCagccAGugGGaCCacgucaUGGUCAUGg -3'
miRNA:   3'- -GGUCUCGc---UCugCC-GGg-----ACCAGUACg -5'
31827 3' -57.2 NC_006938.1 + 19038 0.69 0.510407
Target:  5'- aCCAGAcaaAGGCGGCCaUGGUCGcgGCg -3'
miRNA:   3'- -GGUCUcgcUCUGCCGGgACCAGUa-CG- -5'
31827 3' -57.2 NC_006938.1 + 37937 0.69 0.480321
Target:  5'- gCCAGGGCGguGGAggcguCGGCUCUGGcgCGaGCa -3'
miRNA:   3'- -GGUCUCGC--UCU-----GCCGGGACCa-GUaCG- -5'
31827 3' -57.2 NC_006938.1 + 36977 0.79 0.111128
Target:  5'- uUCGGAGCGcGGACGGCUCUGauccUCAUGCu -3'
miRNA:   3'- -GGUCUCGC-UCUGCCGGGACc---AGUACG- -5'
31827 3' -57.2 NC_006938.1 + 45922 0.77 0.15793
Target:  5'- aUCGGAGCcucggcggcgGAGACGGCCCagaaccUGGUCuAUGCc -3'
miRNA:   3'- -GGUCUCG----------CUCUGCCGGG------ACCAG-UACG- -5'
31827 3' -57.2 NC_006938.1 + 17038 0.75 0.221838
Target:  5'- uCCAGuacaAGCGAG-CGGCCgaGGUCAUcgaGCa -3'
miRNA:   3'- -GGUC----UCGCUCuGCCGGgaCCAGUA---CG- -5'
31827 3' -57.2 NC_006938.1 + 1479 0.74 0.258151
Target:  5'- cCCgAGGGCGAGGUGGCCC-GGUacauucucaCAUGCg -3'
miRNA:   3'- -GG-UCUCGCUCUGCCGGGaCCA---------GUACG- -5'
31827 3' -57.2 NC_006938.1 + 21646 0.73 0.292006
Target:  5'- aCCAGGGCGAcGugGGCCgCgcgcgGGUCcaGCu -3'
miRNA:   3'- -GGUCUCGCU-CugCCGG-Ga----CCAGuaCG- -5'
31827 3' -57.2 NC_006938.1 + 6096 0.72 0.337089
Target:  5'- -aAGGaaGAGACGGCCCUGGcCGagGCa -3'
miRNA:   3'- ggUCUcgCUCUGCCGGGACCaGUa-CG- -5'
31827 3' -57.2 NC_006938.1 + 17813 0.71 0.369008
Target:  5'- cCCucauGAuCGAGGCGGCCCgcgccuaUGG-CAUGCg -3'
miRNA:   3'- -GGu---CUcGCUCUGCCGGG-------ACCaGUACG- -5'
31827 3' -57.2 NC_006938.1 + 15817 0.7 0.40473
Target:  5'- gCCAGAGagcuggcagaccUGGGACcaGGaCCUGGUCAUGUu -3'
miRNA:   3'- -GGUCUC------------GCUCUG--CCgGGACCAGUACG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.