miRNA display CGI


Results 21 - 40 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31827 3' -57.2 NC_006938.1 + 25714 0.68 0.562158
Target:  5'- aCGGAGC---GCGGCCCUucugGGUguaCGUGCg -3'
miRNA:   3'- gGUCUCGcucUGCCGGGA----CCA---GUACG- -5'
31827 3' -57.2 NC_006938.1 + 26386 0.66 0.651563
Target:  5'- uCCAGGGCGAGAgGccGCCCgagaucauccaCGUGCg -3'
miRNA:   3'- -GGUCUCGCUCUgC--CGGGacca-------GUACG- -5'
31827 3' -57.2 NC_006938.1 + 27028 0.68 0.520612
Target:  5'- uCCGGAGgGAca-GGCCCaGGUCAcggGCc -3'
miRNA:   3'- -GGUCUCgCUcugCCGGGaCCAGUa--CG- -5'
31827 3' -57.2 NC_006938.1 + 28007 0.67 0.625909
Target:  5'- aCCAGAaggugauguuugGCGAGugGugcauggaGCUCUGGUUcgAUGCc -3'
miRNA:   3'- -GGUCU------------CGCUCugC--------CGGGACCAG--UACG- -5'
31827 3' -57.2 NC_006938.1 + 31011 0.66 0.66862
Target:  5'- aCGGAGUGAGAUGuacGCCCc-GUCGaGCa -3'
miRNA:   3'- gGUCUCGCUCUGC---CGGGacCAGUaCG- -5'
31827 3' -57.2 NC_006938.1 + 34367 0.67 0.583277
Target:  5'- aCGGAGU-AGAC-GCCCUGGcCcUGCg -3'
miRNA:   3'- gGUCUCGcUCUGcCGGGACCaGuACG- -5'
31827 3' -57.2 NC_006938.1 + 35329 0.67 0.583277
Target:  5'- aCGGAGUGuauCGGCCUgugcgaGGUCAUGa -3'
miRNA:   3'- gGUCUCGCucuGCCGGGa-----CCAGUACg -5'
31827 3' -57.2 NC_006938.1 + 36977 0.79 0.111128
Target:  5'- uUCGGAGCGcGGACGGCUCUGauccUCAUGCu -3'
miRNA:   3'- -GGUCUCGC-UCUGCCGGGACc---AGUACG- -5'
31827 3' -57.2 NC_006938.1 + 37937 0.69 0.480321
Target:  5'- gCCAGGGCGguGGAggcguCGGCUCUGGcgCGaGCa -3'
miRNA:   3'- -GGUCUCGC--UCU-----GCCGGGACCa-GUaCG- -5'
31827 3' -57.2 NC_006938.1 + 38720 0.76 0.175589
Target:  5'- gCCAGAGCG--GCGGCCa-GGUCAUGg -3'
miRNA:   3'- -GGUCUCGCucUGCCGGgaCCAGUACg -5'
31827 3' -57.2 NC_006938.1 + 40574 0.72 0.329235
Target:  5'- gCGGGGUucGGCuGGCCCUGGUCGUcCg -3'
miRNA:   3'- gGUCUCGcuCUG-CCGGGACCAGUAcG- -5'
31827 3' -57.2 NC_006938.1 + 40972 0.66 0.651563
Target:  5'- aUCGGAGCcuugaGAGACagGGCCgUgacaacguccuccgaGGUCGUGCc -3'
miRNA:   3'- -GGUCUCG-----CUCUG--CCGGgA---------------CCAGUACG- -5'
31827 3' -57.2 NC_006938.1 + 41938 0.66 0.67924
Target:  5'- --cGAGCGGGGCa-CCCUGGUCucUGg -3'
miRNA:   3'- gguCUCGCUCUGccGGGACCAGu-ACg -5'
31827 3' -57.2 NC_006938.1 + 42214 0.66 0.657966
Target:  5'- gCC-GAGCGAGAacGCCUgGGUCAcguUGCc -3'
miRNA:   3'- -GGuCUCGCUCUgcCGGGaCCAGU---ACG- -5'
31827 3' -57.2 NC_006938.1 + 45922 0.77 0.15793
Target:  5'- aUCGGAGCcucggcggcgGAGACGGCCCagaaccUGGUCuAUGCc -3'
miRNA:   3'- -GGUCUCG----------CUCUGCCGGG------ACCAG-UACG- -5'
31827 3' -57.2 NC_006938.1 + 47960 0.67 0.583277
Target:  5'- aCguGGuCGGGuCGGCCgUGGUCGacUGCa -3'
miRNA:   3'- -GguCUcGCUCuGCCGGgACCAGU--ACG- -5'
31827 3' -57.2 NC_006938.1 + 48748 0.68 0.540213
Target:  5'- ---cAGCGuuguuccGGACGGCCUUGGUCGccuccacaucUGCg -3'
miRNA:   3'- ggucUCGC-------UCUGCCGGGACCAGU----------ACG- -5'
31827 3' -57.2 NC_006938.1 + 51409 0.7 0.403833
Target:  5'- gCCAGAGCugauGAGcuggaccACGGCCUgcacGGUCGUGg -3'
miRNA:   3'- -GGUCUCG----CUC-------UGCCGGGa---CCAGUACg -5'
31827 3' -57.2 NC_006938.1 + 55509 0.66 0.66862
Target:  5'- uCUGGGGCGAGAa-GCCCaGGcCGccUGCg -3'
miRNA:   3'- -GGUCUCGCUCUgcCGGGaCCaGU--ACG- -5'
31827 3' -57.2 NC_006938.1 + 55894 0.67 0.583277
Target:  5'- cCCAGAcagGCGAGAggguggGGCCUUGGUg--GCg -3'
miRNA:   3'- -GGUCU---CGCUCUg-----CCGGGACCAguaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.