Results 1 - 20 of 30 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31827 | 5' | -53.5 | NC_006938.1 | + | 22446 | 1.12 | 0.001259 |
Target: 5'- aGGGCACCGGCAAGAACACGUUCGUCGg -3' miRNA: 3'- -CCCGUGGCCGUUCUUGUGCAAGCAGC- -5' |
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31827 | 5' | -53.5 | NC_006938.1 | + | 48351 | 0.76 | 0.350529 |
Target: 5'- cGGGCGgCGGUGAcGAGCGCGUccUGUCGg -3' miRNA: 3'- -CCCGUgGCCGUU-CUUGUGCAa-GCAGC- -5' |
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31827 | 5' | -53.5 | NC_006938.1 | + | 57007 | 0.75 | 0.384854 |
Target: 5'- -aGCAUCGGCGgucagcAGGGCGCGUUUGUCu -3' miRNA: 3'- ccCGUGGCCGU------UCUUGUGCAAGCAGc -5' |
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31827 | 5' | -53.5 | NC_006938.1 | + | 3326 | 0.74 | 0.440335 |
Target: 5'- aGGGCACCGGCAAGAugAagg-CGg-- -3' miRNA: 3'- -CCCGUGGCCGUUCUugUgcaaGCagc -5' |
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31827 | 5' | -53.5 | NC_006938.1 | + | 13981 | 0.73 | 0.500088 |
Target: 5'- uGGCGCUGGCGaauguAGAACuCGaggUCGUCGu -3' miRNA: 3'- cCCGUGGCCGU-----UCUUGuGCa--AGCAGC- -5' |
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31827 | 5' | -53.5 | NC_006938.1 | + | 30722 | 0.71 | 0.584698 |
Target: 5'- aGGGUcgCGGCucGGGCGCGUUCGUg- -3' miRNA: 3'- -CCCGugGCCGuuCUUGUGCAAGCAgc -5' |
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31827 | 5' | -53.5 | NC_006938.1 | + | 3774 | 0.7 | 0.64342 |
Target: 5'- cGGGCGCggUGGCAAGGguggcaucgcccggcACGCGgucucgCGUCGc -3' miRNA: 3'- -CCCGUG--GCCGUUCU---------------UGUGCaa----GCAGC- -5' |
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31827 | 5' | -53.5 | NC_006938.1 | + | 22308 | 0.7 | 0.67168 |
Target: 5'- -aGCGCUGGCuGGAGCACGUcuUCGa-- -3' miRNA: 3'- ccCGUGGCCGuUCUUGUGCA--AGCagc -5' |
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31827 | 5' | -53.5 | NC_006938.1 | + | 55979 | 0.69 | 0.693259 |
Target: 5'- cGGGCACCuGGCcGGAGCccuCGcUCGccUCGa -3' miRNA: 3'- -CCCGUGG-CCGuUCUUGu--GCaAGC--AGC- -5' |
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31827 | 5' | -53.5 | NC_006938.1 | + | 1824 | 0.69 | 0.703967 |
Target: 5'- gGGGCcaguugccACCGGCcGGAGCuguccaugGCG-UCGUCGc -3' miRNA: 3'- -CCCG--------UGGCCGuUCUUG--------UGCaAGCAGC- -5' |
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31827 | 5' | -53.5 | NC_006938.1 | + | 58115 | 0.69 | 0.725166 |
Target: 5'- -uGUGCCGGCGAGGGCGCGgcuuaucUCaUCGa -3' miRNA: 3'- ccCGUGGCCGUUCUUGUGCa------AGcAGC- -5' |
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31827 | 5' | -53.5 | NC_006938.1 | + | 37928 | 0.68 | 0.766385 |
Target: 5'- cGGGCGgUGGCcAGGGCG-GUggaggCGUCGg -3' miRNA: 3'- -CCCGUgGCCGuUCUUGUgCAa----GCAGC- -5' |
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31827 | 5' | -53.5 | NC_006938.1 | + | 46853 | 0.68 | 0.783288 |
Target: 5'- -uGCGCCaGCGGGAGC-CGUcugacucgaggaucUCGUCGa -3' miRNA: 3'- ccCGUGGcCGUUCUUGuGCA--------------AGCAGC- -5' |
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31827 | 5' | -53.5 | NC_006938.1 | + | 15862 | 0.67 | 0.795918 |
Target: 5'- uGGGCucugacacACCGGcCAGGuACAUG-UCGUCu -3' miRNA: 3'- -CCCG--------UGGCC-GUUCuUGUGCaAGCAGc -5' |
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31827 | 5' | -53.5 | NC_006938.1 | + | 61426 | 0.67 | 0.80544 |
Target: 5'- uGGCACCGGCccucgacacGGAGCAUcgaGUUCGg-- -3' miRNA: 3'- cCCGUGGCCGu--------UCUUGUG---CAAGCagc -5' |
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31827 | 5' | -53.5 | NC_006938.1 | + | 24757 | 0.67 | 0.80544 |
Target: 5'- aGGGCuuCCGGCccagcaagAAGGGCGCGgcgaUCGcCGc -3' miRNA: 3'- -CCCGu-GGCCG--------UUCUUGUGCa---AGCaGC- -5' |
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31827 | 5' | -53.5 | NC_006938.1 | + | 60948 | 0.67 | 0.813859 |
Target: 5'- cGGGuCACCGGUcuGAACcaucucgACGUUUGUg- -3' miRNA: 3'- -CCC-GUGGCCGuuCUUG-------UGCAAGCAgc -5' |
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31827 | 5' | -53.5 | NC_006938.1 | + | 8062 | 0.67 | 0.814785 |
Target: 5'- cGGGuCGCCGaGCAcgAGGAUggGgaCGUCGa -3' miRNA: 3'- -CCC-GUGGC-CGU--UCUUGugCaaGCAGC- -5' |
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31827 | 5' | -53.5 | NC_006938.1 | + | 4833 | 0.66 | 0.841653 |
Target: 5'- uGGCACCGGCcGAGGA---GUUCGgCGa -3' miRNA: 3'- cCCGUGGCCG-UUCUUgugCAAGCaGC- -5' |
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31827 | 5' | -53.5 | NC_006938.1 | + | 18016 | 0.66 | 0.850189 |
Target: 5'- cGGUGCUGGUGAGGAUGCGacagcgcggCGUCa -3' miRNA: 3'- cCCGUGGCCGUUCUUGUGCaa-------GCAGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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