miRNA display CGI


Results 1 - 20 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31827 5' -53.5 NC_006938.1 + 22446 1.12 0.001259
Target:  5'- aGGGCACCGGCAAGAACACGUUCGUCGg -3'
miRNA:   3'- -CCCGUGGCCGUUCUUGUGCAAGCAGC- -5'
31827 5' -53.5 NC_006938.1 + 27013 0.66 0.874422
Target:  5'- uGGCA-CGGCGAGGAgugggagcgcCGCGUccgCGUCa -3'
miRNA:   3'- cCCGUgGCCGUUCUU----------GUGCAa--GCAGc -5'
31827 5' -53.5 NC_006938.1 + 45753 0.66 0.858501
Target:  5'- gGGGCaACCGGUucAAGuccgugcgcaaGACACGaUUCGcCGg -3'
miRNA:   3'- -CCCG-UGGCCG--UUC-----------UUGUGC-AAGCaGC- -5'
31827 5' -53.5 NC_006938.1 + 18016 0.66 0.850189
Target:  5'- cGGUGCUGGUGAGGAUGCGacagcgcggCGUCa -3'
miRNA:   3'- cCCGUGGCCGUUCUUGUGCaa-------GCAGc -5'
31827 5' -53.5 NC_006938.1 + 4833 0.66 0.841653
Target:  5'- uGGCACCGGCcGAGGA---GUUCGgCGa -3'
miRNA:   3'- cCCGUGGCCG-UUCUUgugCAAGCaGC- -5'
31827 5' -53.5 NC_006938.1 + 61426 0.67 0.80544
Target:  5'- uGGCACCGGCccucgacacGGAGCAUcgaGUUCGg-- -3'
miRNA:   3'- cCCGUGGCCGu--------UCUUGUG---CAAGCagc -5'
31827 5' -53.5 NC_006938.1 + 24757 0.67 0.80544
Target:  5'- aGGGCuuCCGGCccagcaagAAGGGCGCGgcgaUCGcCGc -3'
miRNA:   3'- -CCCGu-GGCCG--------UUCUUGUGCa---AGCaGC- -5'
31827 5' -53.5 NC_006938.1 + 37928 0.68 0.766385
Target:  5'- cGGGCGgUGGCcAGGGCG-GUggaggCGUCGg -3'
miRNA:   3'- -CCCGUgGCCGuUCUUGUgCAa----GCAGC- -5'
31827 5' -53.5 NC_006938.1 + 22308 0.7 0.67168
Target:  5'- -aGCGCUGGCuGGAGCACGUcuUCGa-- -3'
miRNA:   3'- ccCGUGGCCGuUCUUGUGCA--AGCagc -5'
31827 5' -53.5 NC_006938.1 + 3774 0.7 0.64342
Target:  5'- cGGGCGCggUGGCAAGGguggcaucgcccggcACGCGgucucgCGUCGc -3'
miRNA:   3'- -CCCGUG--GCCGUUCU---------------UGUGCaa----GCAGC- -5'
31827 5' -53.5 NC_006938.1 + 3326 0.74 0.440335
Target:  5'- aGGGCACCGGCAAGAugAagg-CGg-- -3'
miRNA:   3'- -CCCGUGGCCGUUCUugUgcaaGCagc -5'
31827 5' -53.5 NC_006938.1 + 57007 0.75 0.384854
Target:  5'- -aGCAUCGGCGgucagcAGGGCGCGUUUGUCu -3'
miRNA:   3'- ccCGUGGCCGU------UCUUGUGCAAGCAGc -5'
31827 5' -53.5 NC_006938.1 + 48351 0.76 0.350529
Target:  5'- cGGGCGgCGGUGAcGAGCGCGUccUGUCGg -3'
miRNA:   3'- -CCCGUgGCCGUU-CUUGUGCAa-GCAGC- -5'
31827 5' -53.5 NC_006938.1 + 58462 0.66 0.858501
Target:  5'- uGGGcCAgCGGCAgcaGGAACGCGaagaaGUUGg -3'
miRNA:   3'- -CCC-GUgGCCGU---UCUUGUGCaag--CAGC- -5'
31827 5' -53.5 NC_006938.1 + 654 0.66 0.858501
Target:  5'- cGGCACCGGCcucccACAUGUcgaucgCGUCu -3'
miRNA:   3'- cCCGUGGCCGuucu-UGUGCAa-----GCAGc -5'
31827 5' -53.5 NC_006938.1 + 43307 0.66 0.866581
Target:  5'- aGGCACUGGCc-GggUAgGacUCGUCGa -3'
miRNA:   3'- cCCGUGGCCGuuCuuGUgCa-AGCAGC- -5'
31827 5' -53.5 NC_006938.1 + 22971 0.66 0.866581
Target:  5'- uGGCAcCCGGC----GCACGUUguaGUCGg -3'
miRNA:   3'- cCCGU-GGCCGuucuUGUGCAAg--CAGC- -5'
31827 5' -53.5 NC_006938.1 + 24256 0.66 0.866581
Target:  5'- cGGGCACUcGCAuGGucACACGgaccaCGUCGc -3'
miRNA:   3'- -CCCGUGGcCGUuCU--UGUGCaa---GCAGC- -5'
31827 5' -53.5 NC_006938.1 + 59588 0.66 0.874422
Target:  5'- uGGCauccGCCGcGCcAG-ACAgGUUCGUCGu -3'
miRNA:   3'- cCCG----UGGC-CGuUCuUGUgCAAGCAGC- -5'
31827 5' -53.5 NC_006938.1 + 13981 0.73 0.500088
Target:  5'- uGGCGCUGGCGaauguAGAACuCGaggUCGUCGu -3'
miRNA:   3'- cCCGUGGCCGU-----UCUUGuGCa--AGCAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.