miRNA display CGI


Results 21 - 40 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31829 3' -56.3 NC_006938.1 + 24397 0.67 0.624505
Target:  5'- -gGAUGCGGCCGUCGAGCa--CCUCGu -3'
miRNA:   3'- ugCUGUGUUGGCAGUUCGagcGGGGC- -5'
31829 3' -56.3 NC_006938.1 + 24420 0.66 0.72999
Target:  5'- gGCGACAUccucuACCGUCucacgugggacauGGGCuUCGgCCCGu -3'
miRNA:   3'- -UGCUGUGu----UGGCAG-------------UUCG-AGCgGGGC- -5'
31829 3' -56.3 NC_006938.1 + 28454 0.67 0.65576
Target:  5'- gGCGGCcggagggACAGCUGUCcAGCcaucaccuUgGCCCCGg -3'
miRNA:   3'- -UGCUG-------UGUUGGCAGuUCG--------AgCGGGGC- -5'
31829 3' -56.3 NC_006938.1 + 28650 0.68 0.601893
Target:  5'- cACGACACGuggcuggagcuCCGUCGcggcugggaguggGGCUCGUUCCu -3'
miRNA:   3'- -UGCUGUGUu----------GGCAGU-------------UCGAGCGGGGc -5'
31829 3' -56.3 NC_006938.1 + 32819 0.66 0.731026
Target:  5'- cCGACAaccCCGcCAAGCUgGCCgCGu -3'
miRNA:   3'- uGCUGUguuGGCaGUUCGAgCGGgGC- -5'
31829 3' -56.3 NC_006938.1 + 34411 0.66 0.699587
Target:  5'- uGCGACAUcguGCCGgagcCAgaccAGC-CGCCCCu -3'
miRNA:   3'- -UGCUGUGu--UGGCa---GU----UCGaGCGGGGc -5'
31829 3' -56.3 NC_006938.1 + 34829 0.68 0.59223
Target:  5'- cGCGACGCGcACgGUCAGuGcCUCGCCUg- -3'
miRNA:   3'- -UGCUGUGU-UGgCAGUU-C-GAGCGGGgc -5'
31829 3' -56.3 NC_006938.1 + 37560 0.66 0.720627
Target:  5'- uUGGcCAUGACC-UCcucgugauuGAGCUCGCCCCa -3'
miRNA:   3'- uGCU-GUGUUGGcAG---------UUCGAGCGGGGc -5'
31829 3' -56.3 NC_006938.1 + 38505 0.68 0.581526
Target:  5'- cACGACGgGACguugaagGUCAGGC-CGCCaCCGg -3'
miRNA:   3'- -UGCUGUgUUGg------CAGUUCGaGCGG-GGC- -5'
31829 3' -56.3 NC_006938.1 + 42537 0.67 0.64499
Target:  5'- aACGGCAaggguucCGGCCGagggaguggCAGGCgUCGCUCCGg -3'
miRNA:   3'- -UGCUGU-------GUUGGCa--------GUUCG-AGCGGGGC- -5'
31829 3' -56.3 NC_006938.1 + 43164 0.7 0.487851
Target:  5'- aACGuC-CAGCUGU--AGCUCGUCCCGg -3'
miRNA:   3'- -UGCuGuGUUGGCAguUCGAGCGGGGC- -5'
31829 3' -56.3 NC_006938.1 + 46541 0.69 0.547579
Target:  5'- -gGACACGACCG-CGAGUgacuccacgaaGCCCUGg -3'
miRNA:   3'- ugCUGUGUUGGCaGUUCGag---------CGGGGC- -5'
31829 3' -56.3 NC_006938.1 + 46985 0.67 0.653607
Target:  5'- uUGGCAUcccaGGCgGUCuggaacagugugagGAGCUCGUCCCGa -3'
miRNA:   3'- uGCUGUG----UUGgCAG--------------UUCGAGCGGGGC- -5'
31829 3' -56.3 NC_006938.1 + 48573 0.67 0.646068
Target:  5'- gGCGAUGgGGCCGcCAGGUUUGCCaCGc -3'
miRNA:   3'- -UGCUGUgUUGGCaGUUCGAGCGGgGC- -5'
31829 3' -56.3 NC_006938.1 + 50954 0.71 0.396505
Target:  5'- cCGugAUcucuCCGUCGgugccgagcuggcggAGCUCGCCCCGc -3'
miRNA:   3'- uGCugUGuu--GGCAGU---------------UCGAGCGGGGC- -5'
31829 3' -56.3 NC_006938.1 + 52461 0.67 0.656836
Target:  5'- gACGACGcCGACCGgCGAGauccCGCUCCa -3'
miRNA:   3'- -UGCUGU-GUUGGCaGUUCga--GCGGGGc -5'
31829 3' -56.3 NC_006938.1 + 53672 0.66 0.73206
Target:  5'- uGCGAUcucucCAACCGUCAuGGCggccaacaccgcguaCGCCCUGg -3'
miRNA:   3'- -UGCUGu----GUUGGCAGU-UCGa--------------GCGGGGC- -5'
31829 3' -56.3 NC_006938.1 + 54751 0.67 0.635288
Target:  5'- gGCGGCcacCAACacaGUCGAGCUCuuccuCCCCa -3'
miRNA:   3'- -UGCUGu--GUUGg--CAGUUCGAGc----GGGGc -5'
31829 3' -56.3 NC_006938.1 + 55405 0.71 0.420165
Target:  5'- uCGGCGCGcucGCCG-CAGGCggccugggcuucUCGCCCCa -3'
miRNA:   3'- uGCUGUGU---UGGCaGUUCG------------AGCGGGGc -5'
31829 3' -56.3 NC_006938.1 + 55978 0.67 0.667581
Target:  5'- -gGGCACcuGGCCGgagccCucGCUCGCCUCGa -3'
miRNA:   3'- ugCUGUG--UUGGCa----GuuCGAGCGGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.