miRNA display CGI


Results 1 - 20 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31830 5' -56 NC_006938.1 + 24223 1.12 0.000584
Target:  5'- cAGGCCGUGGCAAUCGUGAAGCUCGGCa -3'
miRNA:   3'- -UCCGGCACCGUUAGCACUUCGAGCCG- -5'
31830 5' -56 NC_006938.1 + 41408 0.8 0.109639
Target:  5'- cGGCCuGUGG--GUCGUGGAGCUCGGa -3'
miRNA:   3'- uCCGG-CACCguUAGCACUUCGAGCCg -5'
31830 5' -56 NC_006938.1 + 48486 0.75 0.258494
Target:  5'- uAGGCCGUGGCcgccucGAUCGUGGAGacagugccgaCGGUc -3'
miRNA:   3'- -UCCGGCACCG------UUAGCACUUCga--------GCCG- -5'
31830 5' -56 NC_006938.1 + 37928 0.74 0.271878
Target:  5'- cGGGCgGUGGCcagggCGgugGAGGCgUCGGCu -3'
miRNA:   3'- -UCCGgCACCGuua--GCa--CUUCG-AGCCG- -5'
31830 5' -56 NC_006938.1 + 57298 0.74 0.290823
Target:  5'- gAGGCCGUGGagucaGAcgaccagaucaaguUCGUGAAGCgCGGg -3'
miRNA:   3'- -UCCGGCACCg----UU--------------AGCACUUCGaGCCg -5'
31830 5' -56 NC_006938.1 + 34152 0.73 0.33098
Target:  5'- aAGGUCGU--UGAUCGUGguGCUCGGCc -3'
miRNA:   3'- -UCCGGCAccGUUAGCACuuCGAGCCG- -5'
31830 5' -56 NC_006938.1 + 42608 0.72 0.381184
Target:  5'- gGGGCgGUGGC-GUCGaUGGAGUUCGa- -3'
miRNA:   3'- -UCCGgCACCGuUAGC-ACUUCGAGCcg -5'
31830 5' -56 NC_006938.1 + 25770 0.71 0.399012
Target:  5'- -aGCUGUGGCAugaaguccCGUGucucGCUCGGCg -3'
miRNA:   3'- ucCGGCACCGUua------GCACuu--CGAGCCG- -5'
31830 5' -56 NC_006938.1 + 4323 0.7 0.445833
Target:  5'- cGGCCGUgaucugguagaGGCGGagcaCGUugacgauggGGAGCUCGGCg -3'
miRNA:   3'- uCCGGCA-----------CCGUUa---GCA---------CUUCGAGCCG- -5'
31830 5' -56 NC_006938.1 + 59087 0.7 0.453606
Target:  5'- cGGCCacgaggauugaGGCAGcgCGcUGGAGCUCGGCc -3'
miRNA:   3'- uCCGGca---------CCGUUa-GC-ACUUCGAGCCG- -5'
31830 5' -56 NC_006938.1 + 51020 0.7 0.465403
Target:  5'- cGGUCGUGGCGAagucUCGguccAGGCccUCGGCc -3'
miRNA:   3'- uCCGGCACCGUU----AGCac--UUCG--AGCCG- -5'
31830 5' -56 NC_006938.1 + 27653 0.69 0.547662
Target:  5'- -aGUgGUGGCGGaccCGUGGguuucccgAGCUCGGCg -3'
miRNA:   3'- ucCGgCACCGUUa--GCACU--------UCGAGCCG- -5'
31830 5' -56 NC_006938.1 + 52250 0.69 0.547662
Target:  5'- gAGGagGUGGCcuguUCG-GAgGGCUCGGCg -3'
miRNA:   3'- -UCCggCACCGuu--AGCaCU-UCGAGCCG- -5'
31830 5' -56 NC_006938.1 + 21168 0.69 0.547662
Target:  5'- gGGGCCGgaaggUGGUcGUCGUGAuccGGCcguUCGGg -3'
miRNA:   3'- -UCCGGC-----ACCGuUAGCACU---UCG---AGCCg -5'
31830 5' -56 NC_006938.1 + 34983 0.68 0.584058
Target:  5'- cGGCCGgGGCGAaCGUGuugucgacgaaguccAGGUUgGGCg -3'
miRNA:   3'- uCCGGCaCCGUUaGCAC---------------UUCGAgCCG- -5'
31830 5' -56 NC_006938.1 + 46654 0.68 0.611124
Target:  5'- gGGGCCGUgucgccucuccagGGCu-UCGUGGAGUcacucgCGGUc -3'
miRNA:   3'- -UCCGGCA-------------CCGuuAGCACUUCGa-----GCCG- -5'
31830 5' -56 NC_006938.1 + 30013 0.67 0.623077
Target:  5'- uGGCCGUGGCAGcUCaUG-AGC-CaGGCc -3'
miRNA:   3'- uCCGGCACCGUU-AGcACuUCGaG-CCG- -5'
31830 5' -56 NC_006938.1 + 51377 0.67 0.633951
Target:  5'- cGGUCGUGGCGAgcuggCG-GAAcGCgccacCGGCc -3'
miRNA:   3'- uCCGGCACCGUUa----GCaCUU-CGa----GCCG- -5'
31830 5' -56 NC_006938.1 + 16253 0.67 0.644824
Target:  5'- aAGGCCauccaGUGGCAcgaCGUGccgGAGCgcugggUCGGCg -3'
miRNA:   3'- -UCCGG-----CACCGUua-GCAC---UUCG------AGCCG- -5'
31830 5' -56 NC_006938.1 + 38059 0.67 0.644824
Target:  5'- aAGGCCGcUGGCAccacuGUCGguggcaaGAAGCcCGcGCc -3'
miRNA:   3'- -UCCGGC-ACCGU-----UAGCa------CUUCGaGC-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.