Results 1 - 20 of 30 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31830 | 5' | -56 | NC_006938.1 | + | 3774 | 0.66 | 0.688101 |
Target: 5'- cGGGCgCgGUGGCAAggGUGGcaucGCcCGGCa -3' miRNA: 3'- -UCCG-G-CACCGUUagCACUu---CGaGCCG- -5' |
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31830 | 5' | -56 | NC_006938.1 | + | 4323 | 0.7 | 0.445833 |
Target: 5'- cGGCCGUgaucugguagaGGCGGagcaCGUugacgauggGGAGCUCGGCg -3' miRNA: 3'- uCCGGCA-----------CCGUUa---GCA---------CUUCGAGCCG- -5' |
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31830 | 5' | -56 | NC_006938.1 | + | 12545 | 0.66 | 0.730536 |
Target: 5'- aAGGCgauCGUGGCGAUC----AGCacgCGGCg -3' miRNA: 3'- -UCCG---GCACCGUUAGcacuUCGa--GCCG- -5' |
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31830 | 5' | -56 | NC_006938.1 | + | 16253 | 0.67 | 0.644824 |
Target: 5'- aAGGCCauccaGUGGCAcgaCGUGccgGAGCgcugggUCGGCg -3' miRNA: 3'- -UCCGG-----CACCGUua-GCAC---UUCG------AGCCG- -5' |
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31830 | 5' | -56 | NC_006938.1 | + | 21168 | 0.69 | 0.547662 |
Target: 5'- gGGGCCGgaaggUGGUcGUCGUGAuccGGCcguUCGGg -3' miRNA: 3'- -UCCGGC-----ACCGuUAGCACU---UCG---AGCCg -5' |
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31830 | 5' | -56 | NC_006938.1 | + | 21585 | 0.66 | 0.674096 |
Target: 5'- aAGGCCGac-CAGUcCGUGGAGCUCucgcucuucccacaGGCu -3' miRNA: 3'- -UCCGGCaccGUUA-GCACUUCGAG--------------CCG- -5' |
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31830 | 5' | -56 | NC_006938.1 | + | 24223 | 1.12 | 0.000584 |
Target: 5'- cAGGCCGUGGCAAUCGUGAAGCUCGGCa -3' miRNA: 3'- -UCCGGCACCGUUAGCACUUCGAGCCG- -5' |
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31830 | 5' | -56 | NC_006938.1 | + | 25770 | 0.71 | 0.399012 |
Target: 5'- -aGCUGUGGCAugaaguccCGUGucucGCUCGGCg -3' miRNA: 3'- ucCGGCACCGUua------GCACuu--CGAGCCG- -5' |
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31830 | 5' | -56 | NC_006938.1 | + | 27653 | 0.69 | 0.547662 |
Target: 5'- -aGUgGUGGCGGaccCGUGGguuucccgAGCUCGGCg -3' miRNA: 3'- ucCGgCACCGUUa--GCACU--------UCGAGCCG- -5' |
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31830 | 5' | -56 | NC_006938.1 | + | 28498 | 0.66 | 0.687027 |
Target: 5'- gAGGagcuccuCCGUGGCAAgCGcc--GCUCGGCc -3' miRNA: 3'- -UCC-------GGCACCGUUaGCacuuCGAGCCG- -5' |
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31830 | 5' | -56 | NC_006938.1 | + | 30013 | 0.67 | 0.623077 |
Target: 5'- uGGCCGUGGCAGcUCaUG-AGC-CaGGCc -3' miRNA: 3'- uCCGGCACCGUU-AGcACuUCGaG-CCG- -5' |
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31830 | 5' | -56 | NC_006938.1 | + | 34152 | 0.73 | 0.33098 |
Target: 5'- aAGGUCGU--UGAUCGUGguGCUCGGCc -3' miRNA: 3'- -UCCGGCAccGUUAGCACuuCGAGCCG- -5' |
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31830 | 5' | -56 | NC_006938.1 | + | 34983 | 0.68 | 0.584058 |
Target: 5'- cGGCCGgGGCGAaCGUGuugucgacgaaguccAGGUUgGGCg -3' miRNA: 3'- uCCGGCaCCGUUaGCAC---------------UUCGAgCCG- -5' |
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31830 | 5' | -56 | NC_006938.1 | + | 36924 | 0.66 | 0.709467 |
Target: 5'- -cGCCGUGGCGAUUGccUGcAGCUuCuGCa -3' miRNA: 3'- ucCGGCACCGUUAGC--ACuUCGA-GcCG- -5' |
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31830 | 5' | -56 | NC_006938.1 | + | 37843 | 0.66 | 0.688101 |
Target: 5'- cGGCCagcaucagGGCAucGUCGUGGGcCUCGGg -3' miRNA: 3'- uCCGGca------CCGU--UAGCACUUcGAGCCg -5' |
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31830 | 5' | -56 | NC_006938.1 | + | 37928 | 0.74 | 0.271878 |
Target: 5'- cGGGCgGUGGCcagggCGgugGAGGCgUCGGCu -3' miRNA: 3'- -UCCGgCACCGuua--GCa--CUUCG-AGCCG- -5' |
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31830 | 5' | -56 | NC_006938.1 | + | 38059 | 0.67 | 0.644824 |
Target: 5'- aAGGCCGcUGGCAccacuGUCGguggcaaGAAGCcCGcGCc -3' miRNA: 3'- -UCCGGC-ACCGU-----UAGCa------CUUCGaGC-CG- -5' |
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31830 | 5' | -56 | NC_006938.1 | + | 38128 | 0.66 | 0.720044 |
Target: 5'- cGGCCuUGGCcAUCc----GCUCGGCg -3' miRNA: 3'- uCCGGcACCGuUAGcacuuCGAGCCG- -5' |
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31830 | 5' | -56 | NC_006938.1 | + | 41408 | 0.8 | 0.109639 |
Target: 5'- cGGCCuGUGG--GUCGUGGAGCUCGGa -3' miRNA: 3'- uCCGG-CACCguUAGCACUUCGAGCCg -5' |
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31830 | 5' | -56 | NC_006938.1 | + | 42608 | 0.72 | 0.381184 |
Target: 5'- gGGGCgGUGGC-GUCGaUGGAGUUCGa- -3' miRNA: 3'- -UCCGgCACCGuUAGC-ACUUCGAGCcg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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