miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31839 5' -61.1 NC_006938.1 + 7340 0.65 0.519873
Target:  5'- aUCCCGGACGagagaccguccuGGCucaguucgacgaaaGGGA-GCUGGUCCa -3'
miRNA:   3'- -GGGGUCUGC------------CCG--------------CUCUgCGACCAGGc -5'
31839 5' -61.1 NC_006938.1 + 13216 0.66 0.512965
Target:  5'- gUCCgAGACGGGCGGgcuGACagucCUGGcUCCc -3'
miRNA:   3'- -GGGgUCUGCCCGCU---CUGc---GACC-AGGc -5'
31839 5' -61.1 NC_006938.1 + 19744 0.66 0.503164
Target:  5'- gCCC-GACGcGGUGcggaAGGCGCUGGacaaCCGg -3'
miRNA:   3'- gGGGuCUGC-CCGC----UCUGCGACCa---GGC- -5'
31839 5' -61.1 NC_006938.1 + 26656 0.66 0.483813
Target:  5'- -gCCAGAacGGCGAGGgcCGCUGGaCCGc -3'
miRNA:   3'- ggGGUCUgcCCGCUCU--GCGACCaGGC- -5'
31839 5' -61.1 NC_006938.1 + 12981 0.66 0.483813
Target:  5'- gCCCaaggAGGCGGGaGAGgccccggcgaGCGcCUGGUCCa -3'
miRNA:   3'- -GGGg---UCUGCCCgCUC----------UGC-GACCAGGc -5'
31839 5' -61.1 NC_006938.1 + 55023 0.66 0.464827
Target:  5'- aCCCGGAaGGGgauCGAcuGCGCUGGUCUc -3'
miRNA:   3'- gGGGUCUgCCC---GCUc-UGCGACCAGGc -5'
31839 5' -61.1 NC_006938.1 + 23023 0.67 0.45641
Target:  5'- gCCCCAGcuUGGGCaucguccgcaucCGCUGGUCCa -3'
miRNA:   3'- -GGGGUCu-GCCCGcucu--------GCGACCAGGc -5'
31839 5' -61.1 NC_006938.1 + 57963 0.67 0.45548
Target:  5'- uUCCAgGACGGGUGGGACgGC-GGcUCCc -3'
miRNA:   3'- gGGGU-CUGCCCGCUCUG-CGaCC-AGGc -5'
31839 5' -61.1 NC_006938.1 + 20440 0.67 0.45548
Target:  5'- -gCCuGGCGGGCG-GACGCUgccaGGUgCUGa -3'
miRNA:   3'- ggGGuCUGCCCGCuCUGCGA----CCA-GGC- -5'
31839 5' -61.1 NC_006938.1 + 50092 0.67 0.45548
Target:  5'- aCCCAcACGGGCGAuccaGUUGGaCCGa -3'
miRNA:   3'- gGGGUcUGCCCGCUcug-CGACCaGGC- -5'
31839 5' -61.1 NC_006938.1 + 28705 0.67 0.446236
Target:  5'- aCCCAG-CGGGCcuccuucAGACGgaGGUCg- -3'
miRNA:   3'- gGGGUCuGCCCGc------UCUGCgaCCAGgc -5'
31839 5' -61.1 NC_006938.1 + 52758 0.67 0.428067
Target:  5'- gCCCGGAacggcaGGGCGcGugGCUuccGGUUCa -3'
miRNA:   3'- gGGGUCUg-----CCCGCuCugCGA---CCAGGc -5'
31839 5' -61.1 NC_006938.1 + 23756 0.67 0.410343
Target:  5'- gUCCCGGA-GGGUcAGACGgaGGgCCGg -3'
miRNA:   3'- -GGGGUCUgCCCGcUCUGCgaCCaGGC- -5'
31839 5' -61.1 NC_006938.1 + 48190 0.68 0.393081
Target:  5'- gCCCAaucccACGGGCGAcaacACGCaGGUCCa -3'
miRNA:   3'- gGGGUc----UGCCCGCUc---UGCGaCCAGGc -5'
31839 5' -61.1 NC_006938.1 + 32407 0.68 0.393081
Target:  5'- uUCCCGGAC-GGCGAGGaGCUGcucuUCCGc -3'
miRNA:   3'- -GGGGUCUGcCCGCUCUgCGACc---AGGC- -5'
31839 5' -61.1 NC_006938.1 + 28960 0.68 0.38463
Target:  5'- gCCgCuGGCcuGGGCGGGACagaGCcGGUCCGg -3'
miRNA:   3'- -GGgGuCUG--CCCGCUCUG---CGaCCAGGC- -5'
31839 5' -61.1 NC_006938.1 + 27015 0.68 0.376299
Target:  5'- gCCCAGgucACGGGCc--GCGCcGGUCCa -3'
miRNA:   3'- gGGGUC---UGCCCGcucUGCGaCCAGGc -5'
31839 5' -61.1 NC_006938.1 + 21101 0.7 0.306941
Target:  5'- gCCCCAGcACGaGCG-GAUGCU-GUCCGa -3'
miRNA:   3'- -GGGGUC-UGCcCGCuCUGCGAcCAGGC- -5'
31839 5' -61.1 NC_006938.1 + 7488 0.7 0.292921
Target:  5'- gCCCUgAGcCGGGUcgacGAGugGCUGGcaUCCGg -3'
miRNA:   3'- -GGGG-UCuGCCCG----CUCugCGACC--AGGC- -5'
31839 5' -61.1 NC_006938.1 + 34690 0.7 0.272837
Target:  5'- gCCCAGAaGGGCG-GACagcuGCUGGacUCCGu -3'
miRNA:   3'- gGGGUCUgCCCGCuCUG----CGACC--AGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.