miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31840 5' -61.9 NC_006938.1 + 24605 0.66 0.417543
Target:  5'- gGGCACuCCGCAGCacguCUACcucCGGCGCUa -3'
miRNA:   3'- -CUGUG-GGUGUCGc---GGUGc--GCCGCGAc -5'
31840 5' -61.9 NC_006938.1 + 22290 0.66 0.417543
Target:  5'- -uCGCCgGgAGCGCuCACGa-GCGCUGg -3'
miRNA:   3'- cuGUGGgUgUCGCG-GUGCgcCGCGAC- -5'
31840 5' -61.9 NC_006938.1 + 47099 0.66 0.417543
Target:  5'- -cCGCCCaggGCAGCGUCGuugccacccgUGUGGCGCa- -3'
miRNA:   3'- cuGUGGG---UGUCGCGGU----------GCGCCGCGac -5'
31840 5' -61.9 NC_006938.1 + 22320 0.66 0.399771
Target:  5'- uACGCCUgugGCGGUGCCuCGCcggaGGgGCUGa -3'
miRNA:   3'- cUGUGGG---UGUCGCGGuGCG----CCgCGAC- -5'
31840 5' -61.9 NC_006938.1 + 22544 0.66 0.399771
Target:  5'- aACGCCCACcucCGCgACaaGGUGCUGg -3'
miRNA:   3'- cUGUGGGUGuc-GCGgUGcgCCGCGAC- -5'
31840 5' -61.9 NC_006938.1 + 28198 0.66 0.391068
Target:  5'- -cCGuCCCACAGaCGacgagaGCGCGGCGCg- -3'
miRNA:   3'- cuGU-GGGUGUC-GCgg----UGCGCCGCGac -5'
31840 5' -61.9 NC_006938.1 + 43228 0.66 0.382489
Target:  5'- -cUACCCGgcCAGUGCCuuCGCGGCGa-- -3'
miRNA:   3'- cuGUGGGU--GUCGCGGu-GCGCCGCgac -5'
31840 5' -61.9 NC_006938.1 + 13816 0.66 0.374037
Target:  5'- uACGCCUu--GCGCU-CGUGGUGCUGa -3'
miRNA:   3'- cUGUGGGuguCGCGGuGCGCCGCGAC- -5'
31840 5' -61.9 NC_006938.1 + 13751 0.67 0.366539
Target:  5'- -gUugCCACAGUGCCGCGCuccaugagcaugucaGCGCg- -3'
miRNA:   3'- cuGugGGUGUCGCGGUGCGc--------------CGCGac -5'
31840 5' -61.9 NC_006938.1 + 55275 0.67 0.341514
Target:  5'- cACGCCCA---CGCCACcCGGCGCa- -3'
miRNA:   3'- cUGUGGGUgucGCGGUGcGCCGCGac -5'
31840 5' -61.9 NC_006938.1 + 41600 0.67 0.326035
Target:  5'- gGACGCCaCGuCAGCagggagcgGCUGCGCGGCGgcCUGg -3'
miRNA:   3'- -CUGUGG-GU-GUCG--------CGGUGCGCCGC--GAC- -5'
31840 5' -61.9 NC_006938.1 + 8990 0.68 0.318494
Target:  5'- gGAU-CCCAUGGCgGCCuggACGCGGCccGCUGg -3'
miRNA:   3'- -CUGuGGGUGUCG-CGG---UGCGCCG--CGAC- -5'
31840 5' -61.9 NC_006938.1 + 1971 0.68 0.303806
Target:  5'- --gGCUCAUAGCGCgC-CGUGGCGaCUGa -3'
miRNA:   3'- cugUGGGUGUCGCG-GuGCGCCGC-GAC- -5'
31840 5' -61.9 NC_006938.1 + 32820 0.68 0.303806
Target:  5'- cGACAacCCCGCcaAGCugGCCGCGUGGCucgagggcaGCUGg -3'
miRNA:   3'- -CUGU--GGGUG--UCG--CGGUGCGCCG---------CGAC- -5'
31840 5' -61.9 NC_006938.1 + 50832 0.68 0.296659
Target:  5'- cGCAgCCugGGUGUgACGCGGgGCg- -3'
miRNA:   3'- cUGUgGGugUCGCGgUGCGCCgCGac -5'
31840 5' -61.9 NC_006938.1 + 58168 0.69 0.262885
Target:  5'- aGCAguucCUCGCGGaCGCCaACGUGGCGCUc -3'
miRNA:   3'- cUGU----GGGUGUC-GCGG-UGCGCCGCGAc -5'
31840 5' -61.9 NC_006938.1 + 50192 0.69 0.244161
Target:  5'- uGACACCCuCGGCGgCGacgauCGCGGC-CUGa -3'
miRNA:   3'- -CUGUGGGuGUCGCgGU-----GCGCCGcGAC- -5'
31840 5' -61.9 NC_006938.1 + 51921 0.7 0.232304
Target:  5'- aGACGCUCugGG-GUCAgGCGGCGgUGg -3'
miRNA:   3'- -CUGUGGGugUCgCGGUgCGCCGCgAC- -5'
31840 5' -61.9 NC_006938.1 + 58273 0.7 0.210043
Target:  5'- gGAgACCCgACgAGCGCCACGuUGGCGUc- -3'
miRNA:   3'- -CUgUGGG-UG-UCGCGGUGC-GCCGCGac -5'
31840 5' -61.9 NC_006938.1 + 51986 0.7 0.210043
Target:  5'- -uCugCUGCAGCGCCACugGCGGCGaCa- -3'
miRNA:   3'- cuGugGGUGUCGCGGUG--CGCCGC-Gac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.