Results 21 - 25 of 25 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31840 | 5' | -61.9 | NC_006938.1 | + | 13751 | 0.67 | 0.366539 |
Target: 5'- -gUugCCACAGUGCCGCGCuccaugagcaugucaGCGCg- -3' miRNA: 3'- cuGugGGUGUCGCGGUGCGc--------------CGCGac -5' |
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31840 | 5' | -61.9 | NC_006938.1 | + | 9827 | 0.73 | 0.146122 |
Target: 5'- uGACACCCA--GUcCCAUGCGGCGCUu -3' miRNA: 3'- -CUGUGGGUguCGcGGUGCGCCGCGAc -5' |
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31840 | 5' | -61.9 | NC_006938.1 | + | 9273 | 0.75 | 0.102907 |
Target: 5'- gGACGCCCAUcugcGCGCCACGgCGGUggccagaGCUGg -3' miRNA: 3'- -CUGUGGGUGu---CGCGGUGC-GCCG-------CGAC- -5' |
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31840 | 5' | -61.9 | NC_006938.1 | + | 8990 | 0.68 | 0.318494 |
Target: 5'- gGAU-CCCAUGGCgGCCuggACGCGGCccGCUGg -3' miRNA: 3'- -CUGuGGGUGUCG-CGG---UGCGCCG--CGAC- -5' |
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31840 | 5' | -61.9 | NC_006938.1 | + | 1971 | 0.68 | 0.303806 |
Target: 5'- --gGCUCAUAGCGCgC-CGUGGCGaCUGa -3' miRNA: 3'- cugUGGGUGUCGCG-GuGCGCCGC-GAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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