miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31841 5' -60.8 NC_006938.1 + 21855 0.66 0.466359
Target:  5'- cGGUccgGGUUGUCcggGUCCagGCCCUGCACGc -3'
miRNA:   3'- -CCG---CCAACGG---CGGGgaCGGGAUGUGU- -5'
31841 5' -60.8 NC_006938.1 + 52503 0.66 0.447342
Target:  5'- gGGcCGGUUGuuGCCaCC-GCCCUGg--- -3'
miRNA:   3'- -CC-GCCAACggCGG-GGaCGGGAUgugu -5'
31841 5' -60.8 NC_006938.1 + 59514 0.66 0.437996
Target:  5'- cGGCGGaUGCCaGCCUCguccggGCCaggcuCACAa -3'
miRNA:   3'- -CCGCCaACGG-CGGGGa-----CGGgau--GUGU- -5'
31841 5' -60.8 NC_006938.1 + 39129 0.66 0.437996
Target:  5'- aGCGG-UGCCGUC---GUCCUGCACAg -3'
miRNA:   3'- cCGCCaACGGCGGggaCGGGAUGUGU- -5'
31841 5' -60.8 NC_006938.1 + 51501 0.66 0.428762
Target:  5'- aGGCGaucGUcGCCGCguggaacaaCCUGCCCgGCGCGu -3'
miRNA:   3'- -CCGC---CAaCGGCGg--------GGACGGGaUGUGU- -5'
31841 5' -60.8 NC_006938.1 + 51906 0.68 0.359257
Target:  5'- aGUGGUcUGCaGCUCCUGCUCUgugucGCGCAg -3'
miRNA:   3'- cCGCCA-ACGgCGGGGACGGGA-----UGUGU- -5'
31841 5' -60.8 NC_006938.1 + 51951 0.69 0.305211
Target:  5'- cGGCGG-UGCCGCCCgauCUGCCgCgaaGgACGu -3'
miRNA:   3'- -CCGCCaACGGCGGG---GACGG-Ga--UgUGU- -5'
31841 5' -60.8 NC_006938.1 + 5367 0.69 0.298019
Target:  5'- aGGCGGUgugGUcaacuCGCCCCUcgGCCaCUGgACAg -3'
miRNA:   3'- -CCGCCAa--CG-----GCGGGGA--CGG-GAUgUGU- -5'
31841 5' -60.8 NC_006938.1 + 16036 0.7 0.279938
Target:  5'- cGGCGuaucggGCCucGCCCCUGCCCUgugaguaugccuuguGCGCc -3'
miRNA:   3'- -CCGCcaa---CGG--CGGGGACGGGA---------------UGUGu -5'
31841 5' -60.8 NC_006938.1 + 32129 0.7 0.24519
Target:  5'- aGGUGGgcuggGCU-CCCCUGCCCggcuCGCAg -3'
miRNA:   3'- -CCGCCaa---CGGcGGGGACGGGau--GUGU- -5'
31841 5' -60.8 NC_006938.1 + 28364 0.72 0.205558
Target:  5'- uGGCuGGacaGCUGUCCCUccggccGCCCUACACGg -3'
miRNA:   3'- -CCG-CCaa-CGGCGGGGA------CGGGAUGUGU- -5'
31841 5' -60.8 NC_006938.1 + 28163 1.1 0.000305
Target:  5'- aGGCGGUUGCCGCCCCUGCCCUACACAc -3'
miRNA:   3'- -CCGCCAACGGCGGGGACGGGAUGUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.