miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31842 5' -61.8 NC_006938.1 + 28516 1.09 0.00025
Target:  5'- aAGCGCCGCUCGGCCAAGACCAGGGACg -3'
miRNA:   3'- -UCGCGGCGAGCCGGUUCUGGUCCCUG- -5'
31842 5' -61.8 NC_006938.1 + 20677 0.75 0.091977
Target:  5'- uGGCGCCGCcgccgUGGUgAGaACCAGGGACa -3'
miRNA:   3'- -UCGCGGCGa----GCCGgUUcUGGUCCCUG- -5'
31842 5' -61.8 NC_006938.1 + 29780 0.72 0.153138
Target:  5'- uGGCaGCCauccgGCUCGGCCGagGGGCCAGcccGGACc -3'
miRNA:   3'- -UCG-CGG-----CGAGCCGGU--UCUGGUC---CCUG- -5'
31842 5' -61.8 NC_006938.1 + 15461 0.72 0.170045
Target:  5'- uGgGCCGCU-GGCCucGACCAGGaGCg -3'
miRNA:   3'- uCgCGGCGAgCCGGuuCUGGUCCcUG- -5'
31842 5' -61.8 NC_006938.1 + 35022 0.72 0.174525
Target:  5'- gAGCGCCGaCguucuucgCGGCCAugaucuGGACCAggucggccGGGGCg -3'
miRNA:   3'- -UCGCGGC-Ga-------GCCGGU------UCUGGU--------CCCUG- -5'
31842 5' -61.8 NC_006938.1 + 34098 0.71 0.193511
Target:  5'- cGCGCU-CUacaCGGCCGAGGCCAucaucaacuGGGACa -3'
miRNA:   3'- uCGCGGcGA---GCCGGUUCUGGU---------CCCUG- -5'
31842 5' -61.8 NC_006938.1 + 15554 0.71 0.193511
Target:  5'- cAGC-CCGCUCcuGGUCGAGGCCAGcGGCc -3'
miRNA:   3'- -UCGcGGCGAG--CCGGUUCUGGUCcCUG- -5'
31842 5' -61.8 NC_006938.1 + 34140 0.69 0.255218
Target:  5'- cGUGgUGCUCGGCCcgGAGGCCu-GGACc -3'
miRNA:   3'- uCGCgGCGAGCCGG--UUCUGGucCCUG- -5'
31842 5' -61.8 NC_006938.1 + 9504 0.68 0.302354
Target:  5'- gGGUGCCggGCUCGGCCcAGucCCAcGuGGACc -3'
miRNA:   3'- -UCGCGG--CGAGCCGGuUCu-GGU-C-CCUG- -5'
31842 5' -61.8 NC_006938.1 + 55891 0.68 0.302354
Target:  5'- gAGCGaggGCUcCGGCCAGGugCccGGACa -3'
miRNA:   3'- -UCGCgg-CGA-GCCGGUUCugGucCCUG- -5'
31842 5' -61.8 NC_006938.1 + 29269 0.68 0.305241
Target:  5'- cGCGCCGUuugCGGCCAgcggauccucuaccuGGugCGacgccaccGGGACg -3'
miRNA:   3'- uCGCGGCGa--GCCGGU---------------UCugGU--------CCCUG- -5'
31842 5' -61.8 NC_006938.1 + 5588 0.68 0.309611
Target:  5'- aGGuCGCCGCUCucgaGGCCAagcucaaggAGGCCAaGGAa -3'
miRNA:   3'- -UC-GCGGCGAG----CCGGU---------UCUGGUcCCUg -5'
31842 5' -61.8 NC_006938.1 + 32582 0.68 0.314769
Target:  5'- uGCGCUG-UCGuGCCAcgaccaacccguacGGGCCGGGGcACa -3'
miRNA:   3'- uCGCGGCgAGC-CGGU--------------UCUGGUCCC-UG- -5'
31842 5' -61.8 NC_006938.1 + 22823 0.68 0.314769
Target:  5'- aAGCGCCGggagucgggaC-CGGCCGGGACCacccaaucgcuguuGGaGGACa -3'
miRNA:   3'- -UCGCGGC----------GaGCCGGUUCUGG--------------UC-CCUG- -5'
31842 5' -61.8 NC_006938.1 + 40121 0.68 0.316999
Target:  5'- cAGCGCCGgUCaGCCGGGugUcgcggccgaGGuGGACa -3'
miRNA:   3'- -UCGCGGCgAGcCGGUUCugG---------UC-CCUG- -5'
31842 5' -61.8 NC_006938.1 + 42043 0.67 0.331401
Target:  5'- cGUGCCGaaCGaGCCGgguccagAGACCAGGGuGCc -3'
miRNA:   3'- uCGCGGCgaGC-CGGU-------UCUGGUCCC-UG- -5'
31842 5' -61.8 NC_006938.1 + 37102 0.67 0.347872
Target:  5'- cGCGCCGgUcCGGCUGucccuGACCucGGACa -3'
miRNA:   3'- uCGCGGCgA-GCCGGUu----CUGGucCCUG- -5'
31842 5' -61.8 NC_006938.1 + 29274 0.67 0.347872
Target:  5'- uGCGCCugcguCUCGGUCAcAGGCCAGcGGugGCa -3'
miRNA:   3'- uCGCGGc----GAGCCGGU-UCUGGUC-CC--UG- -5'
31842 5' -61.8 NC_006938.1 + 58450 0.67 0.355918
Target:  5'- aGGaCGUcaaCGCggagaccuuugUCGGCCu-GGCCAGGGACc -3'
miRNA:   3'- -UC-GCG---GCG-----------AGCCGGuuCUGGUCCCUG- -5'
31842 5' -61.8 NC_006938.1 + 10970 0.66 0.3724
Target:  5'- -uUGCUGCcaacaUCGGCCGGGuCUGGGGAg -3'
miRNA:   3'- ucGCGGCG-----AGCCGGUUCuGGUCCCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.