Results 1 - 20 of 29 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31842 | 5' | -61.8 | NC_006938.1 | + | 5588 | 0.68 | 0.309611 |
Target: 5'- aGGuCGCCGCUCucgaGGCCAagcucaaggAGGCCAaGGAa -3' miRNA: 3'- -UC-GCGGCGAG----CCGGU---------UCUGGUcCCUg -5' |
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31842 | 5' | -61.8 | NC_006938.1 | + | 6582 | 0.66 | 0.422138 |
Target: 5'- cAGCG-CGCUCGGCauugccgucuucguCGAGcACCAG-GACa -3' miRNA: 3'- -UCGCgGCGAGCCG--------------GUUC-UGGUCcCUG- -5' |
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31842 | 5' | -61.8 | NC_006938.1 | + | 7666 | 0.66 | 0.3724 |
Target: 5'- gAGaCGCC-CUCGGCCAGGugCuuGGcCa -3' miRNA: 3'- -UC-GCGGcGAGCCGGUUCugGucCCuG- -5' |
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31842 | 5' | -61.8 | NC_006938.1 | + | 8248 | 0.66 | 0.377444 |
Target: 5'- uGGCGUCccaaaucgguGCaCGGCCGAGucuccauaggagcCCAGGGGCa -3' miRNA: 3'- -UCGCGG----------CGaGCCGGUUCu------------GGUCCCUG- -5' |
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31842 | 5' | -61.8 | NC_006938.1 | + | 9504 | 0.68 | 0.302354 |
Target: 5'- gGGUGCCggGCUCGGCCcAGucCCAcGuGGACc -3' miRNA: 3'- -UCGCGG--CGAGCCGGuUCu-GGU-C-CCUG- -5' |
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31842 | 5' | -61.8 | NC_006938.1 | + | 10970 | 0.66 | 0.3724 |
Target: 5'- -uUGCUGCcaacaUCGGCCGGGuCUGGGGAg -3' miRNA: 3'- ucGCGGCG-----AGCCGGUUCuGGUCCCUg -5' |
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31842 | 5' | -61.8 | NC_006938.1 | + | 15461 | 0.72 | 0.170045 |
Target: 5'- uGgGCCGCU-GGCCucGACCAGGaGCg -3' miRNA: 3'- uCgCGGCGAgCCGGuuCUGGUCCcUG- -5' |
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31842 | 5' | -61.8 | NC_006938.1 | + | 15554 | 0.71 | 0.193511 |
Target: 5'- cAGC-CCGCUCcuGGUCGAGGCCAGcGGCc -3' miRNA: 3'- -UCGcGGCGAG--CCGGUUCUGGUCcCUG- -5' |
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31842 | 5' | -61.8 | NC_006938.1 | + | 18936 | 0.66 | 0.406 |
Target: 5'- -aCGCUGCUCGGCCGucgcugccgcuucAGAUgGGaGACg -3' miRNA: 3'- ucGCGGCGAGCCGGU-------------UCUGgUCcCUG- -5' |
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31842 | 5' | -61.8 | NC_006938.1 | + | 20677 | 0.75 | 0.091977 |
Target: 5'- uGGCGCCGCcgccgUGGUgAGaACCAGGGACa -3' miRNA: 3'- -UCGCGGCGa----GCCGgUUcUGGUCCCUG- -5' |
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31842 | 5' | -61.8 | NC_006938.1 | + | 21627 | 0.66 | 0.380833 |
Target: 5'- -cCGCUGCUggaCGGCgGuGACCAGGG-Cg -3' miRNA: 3'- ucGCGGCGA---GCCGgUuCUGGUCCCuG- -5' |
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31842 | 5' | -61.8 | NC_006938.1 | + | 22823 | 0.68 | 0.314769 |
Target: 5'- aAGCGCCGggagucgggaC-CGGCCGGGACCacccaaucgcuguuGGaGGACa -3' miRNA: 3'- -UCGCGGC----------GaGCCGGUUCUGG--------------UC-CCUG- -5' |
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31842 | 5' | -61.8 | NC_006938.1 | + | 26872 | 0.66 | 0.415816 |
Target: 5'- --gGCCGCguuucgCGGUCGGGGCUAcGaGGACa -3' miRNA: 3'- ucgCGGCGa-----GCCGGUUCUGGU-C-CCUG- -5' |
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31842 | 5' | -61.8 | NC_006938.1 | + | 27539 | 0.66 | 0.415816 |
Target: 5'- cGUGCUcCUCGGCCGcuccGCCgcagaAGGGACa -3' miRNA: 3'- uCGCGGcGAGCCGGUuc--UGG-----UCCCUG- -5' |
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31842 | 5' | -61.8 | NC_006938.1 | + | 28516 | 1.09 | 0.00025 |
Target: 5'- aAGCGCCGCUCGGCCAAGACCAGGGACg -3' miRNA: 3'- -UCGCGGCGAGCCGGUUCUGGUCCCUG- -5' |
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31842 | 5' | -61.8 | NC_006938.1 | + | 29269 | 0.68 | 0.305241 |
Target: 5'- cGCGCCGUuugCGGCCAgcggauccucuaccuGGugCGacgccaccGGGACg -3' miRNA: 3'- uCGCGGCGa--GCCGGU---------------UCugGU--------CCCUG- -5' |
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31842 | 5' | -61.8 | NC_006938.1 | + | 29274 | 0.67 | 0.347872 |
Target: 5'- uGCGCCugcguCUCGGUCAcAGGCCAGcGGugGCa -3' miRNA: 3'- uCGCGGc----GAGCCGGU-UCUGGUC-CC--UG- -5' |
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31842 | 5' | -61.8 | NC_006938.1 | + | 29780 | 0.72 | 0.153138 |
Target: 5'- uGGCaGCCauccgGCUCGGCCGagGGGCCAGcccGGACc -3' miRNA: 3'- -UCG-CGG-----CGAGCCGGU--UCUGGUC---CCUG- -5' |
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31842 | 5' | -61.8 | NC_006938.1 | + | 32582 | 0.68 | 0.314769 |
Target: 5'- uGCGCUG-UCGuGCCAcgaccaacccguacGGGCCGGGGcACa -3' miRNA: 3'- uCGCGGCgAGC-CGGU--------------UCUGGUCCC-UG- -5' |
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31842 | 5' | -61.8 | NC_006938.1 | + | 32833 | 0.66 | 0.398078 |
Target: 5'- aAGCugGCCGCgUGGCuCGAGGgCAgcuGGGACa -3' miRNA: 3'- -UCG--CGGCGaGCCG-GUUCUgGU---CCCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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