miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31847 5' -59.2 NC_006938.1 + 29780 0.66 0.600904
Target:  5'- uGGCAgccaUCCGGCUCggccgaggGGCCaGCCCg -3'
miRNA:   3'- -CCGUacc-AGGCCGAGag------CUGGgUGGG- -5'
31847 5' -59.2 NC_006938.1 + 51014 0.66 0.590452
Target:  5'- uGGCGaagucucGGUCCaGGCcCUCGGCC-GCCUc -3'
miRNA:   3'- -CCGUa------CCAGG-CCGaGAGCUGGgUGGG- -5'
31847 5' -59.2 NC_006938.1 + 9507 0.66 0.580032
Target:  5'- -aCAgGGUgCCGGg-CUCGGCCCAguCCCa -3'
miRNA:   3'- ccGUaCCA-GGCCgaGAGCUGGGU--GGG- -5'
31847 5' -59.2 NC_006938.1 + 34565 0.66 0.569651
Target:  5'- aGGCcagGGUCgGaGCgaaugcccggCUCGACCUGCCg -3'
miRNA:   3'- -CCGua-CCAGgC-CGa---------GAGCUGGGUGGg -5'
31847 5' -59.2 NC_006938.1 + 56886 0.66 0.559317
Target:  5'- --gAUGGUuccCUGGCcCUCGAUCCACUUg -3'
miRNA:   3'- ccgUACCA---GGCCGaGAGCUGGGUGGG- -5'
31847 5' -59.2 NC_006938.1 + 29887 0.66 0.559317
Target:  5'- uGGaucUGGUCCgGGCUggcccCUCGGCCgAgCCg -3'
miRNA:   3'- -CCgu-ACCAGG-CCGA-----GAGCUGGgUgGG- -5'
31847 5' -59.2 NC_006938.1 + 2438 0.66 0.559317
Target:  5'- cGGCcuUGGUCUGGUUgaccucgucCUCGAcggaguccucCCCGCCg -3'
miRNA:   3'- -CCGu-ACCAGGCCGA---------GAGCU----------GGGUGGg -5'
31847 5' -59.2 NC_006938.1 + 4278 0.66 0.549035
Target:  5'- cGGC--GGUCagcaGGgUCUCGAugucggagccgUCCGCCCg -3'
miRNA:   3'- -CCGuaCCAGg---CCgAGAGCU-----------GGGUGGG- -5'
31847 5' -59.2 NC_006938.1 + 29752 0.66 0.549035
Target:  5'- cGGCA-GGggCGGCUCgUCGAgCCAgauccuccucCCCa -3'
miRNA:   3'- -CCGUaCCagGCCGAG-AGCUgGGU----------GGG- -5'
31847 5' -59.2 NC_006938.1 + 32583 0.67 0.538813
Target:  5'- gGGCcaguUGGUCa-GCUCgu--CCCACCCg -3'
miRNA:   3'- -CCGu---ACCAGgcCGAGagcuGGGUGGG- -5'
31847 5' -59.2 NC_006938.1 + 39075 0.67 0.508565
Target:  5'- uGGCAUGuacgagacCUGGCUCuUCGGCCCcgguGCCa -3'
miRNA:   3'- -CCGUACca------GGCCGAG-AGCUGGG----UGGg -5'
31847 5' -59.2 NC_006938.1 + 53922 0.67 0.498641
Target:  5'- uGUGUGGUCUGGagcgCGGCCUcgguGCCCa -3'
miRNA:   3'- cCGUACCAGGCCgagaGCUGGG----UGGG- -5'
31847 5' -59.2 NC_006938.1 + 41505 0.67 0.488803
Target:  5'- aGGCGaucaGUCCGaGCUCcaCGACCCACaggCCg -3'
miRNA:   3'- -CCGUac--CAGGC-CGAGa-GCUGGGUG---GG- -5'
31847 5' -59.2 NC_006938.1 + 29637 0.68 0.477119
Target:  5'- uGGCAccagaagccauggUGGaggaggaUCUGGCUCgaCGAgCCGCCCc -3'
miRNA:   3'- -CCGU-------------ACC-------AGGCCGAGa-GCUgGGUGGG- -5'
31847 5' -59.2 NC_006938.1 + 21665 0.68 0.469407
Target:  5'- cGCGcgGGUCCaGCUgUCGggcaACCUGCCCc -3'
miRNA:   3'- cCGUa-CCAGGcCGAgAGC----UGGGUGGG- -5'
31847 5' -59.2 NC_006938.1 + 33099 0.68 0.459859
Target:  5'- cGCuguccUGGaagucagagCCGucGCUCUCGGCCCACCa -3'
miRNA:   3'- cCGu----ACCa--------GGC--CGAGAGCUGGGUGGg -5'
31847 5' -59.2 NC_006938.1 + 61421 0.68 0.450414
Target:  5'- cGGCGUGGcaCCGGCcCUCGACacggagCAUCg -3'
miRNA:   3'- -CCGUACCa-GGCCGaGAGCUGg-----GUGGg -5'
31847 5' -59.2 NC_006938.1 + 11108 0.68 0.450414
Target:  5'- uGGCAggagGcGagUGGUUCUcgcccgacacCGACCCGCCCg -3'
miRNA:   3'- -CCGUa---C-CagGCCGAGA----------GCUGGGUGGG- -5'
31847 5' -59.2 NC_006938.1 + 13165 0.69 0.422737
Target:  5'- uGGCA-GG-CCGGUUCgcaccCGGCaCCACCg -3'
miRNA:   3'- -CCGUaCCaGGCCGAGa----GCUG-GGUGGg -5'
31847 5' -59.2 NC_006938.1 + 25765 0.69 0.422737
Target:  5'- uGGCAUGaagucccguGUCUcGCUCggcgUGACCCACgCCg -3'
miRNA:   3'- -CCGUAC---------CAGGcCGAGa---GCUGGGUG-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.