Results 21 - 35 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31855 | 5' | -56.6 | NC_006938.1 | + | 32764 | 1.09 | 0.000832 |
Target: 5'- aACACCAUCCUCCUCAAGGCACAGCCGa -3' miRNA: 3'- -UGUGGUAGGAGGAGUUCCGUGUCGGC- -5' |
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31855 | 5' | -56.6 | NC_006938.1 | + | 33416 | 0.67 | 0.573907 |
Target: 5'- cCACCcgGUCUUCCUCGAcccGGCGCGcuuGUCGg -3' miRNA: 3'- uGUGG--UAGGAGGAGUU---CCGUGU---CGGC- -5' |
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31855 | 5' | -56.6 | NC_006938.1 | + | 34938 | 0.71 | 0.350529 |
Target: 5'- cCACCA-CCUCCUCGGGGU-UGGCCc -3' miRNA: 3'- uGUGGUaGGAGGAGUUCCGuGUCGGc -5' |
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31855 | 5' | -56.6 | NC_006938.1 | + | 35788 | 0.69 | 0.500088 |
Target: 5'- cAC-CCGUCC-CUUCGAGGgGCAGaCCa -3' miRNA: 3'- -UGuGGUAGGaGGAGUUCCgUGUC-GGc -5' |
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31855 | 5' | -56.6 | NC_006938.1 | + | 36049 | 0.66 | 0.671679 |
Target: 5'- aACGCCAcCCUCUUCGAGGaggagaucUACGucGCCa -3' miRNA: 3'- -UGUGGUaGGAGGAGUUCC--------GUGU--CGGc -5' |
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31855 | 5' | -56.6 | NC_006938.1 | + | 38011 | 0.67 | 0.6053 |
Target: 5'- gGCAaCAUCCUgcgCCUCAAGGgACGcgagcacGCCGa -3' miRNA: 3'- -UGUgGUAGGA---GGAGUUCCgUGU-------CGGC- -5' |
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31855 | 5' | -56.6 | NC_006938.1 | + | 39124 | 0.67 | 0.606387 |
Target: 5'- -uGCCGUCgUCCUgcaCAGcGGCAguGCCa -3' miRNA: 3'- ugUGGUAGgAGGA---GUU-CCGUguCGGc -5' |
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31855 | 5' | -56.6 | NC_006938.1 | + | 40471 | 0.68 | 0.531287 |
Target: 5'- gACAC--UCCUCCgacggacgacCAGGGC-CAGCCGa -3' miRNA: 3'- -UGUGguAGGAGGa---------GUUCCGuGUCGGC- -5' |
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31855 | 5' | -56.6 | NC_006938.1 | + | 42682 | 0.66 | 0.66083 |
Target: 5'- cCACCA-CCUCCUCA-GGUggaGgGGUCGa -3' miRNA: 3'- uGUGGUaGGAGGAGUuCCG---UgUCGGC- -5' |
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31855 | 5' | -56.6 | NC_006938.1 | + | 43328 | 0.67 | 0.617269 |
Target: 5'- cCACCGUgCUgUUCGccgcgaAGGCACuGGCCGg -3' miRNA: 3'- uGUGGUAgGAgGAGU------UCCGUG-UCGGC- -5' |
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31855 | 5' | -56.6 | NC_006938.1 | + | 48389 | 0.66 | 0.682492 |
Target: 5'- gGCACUGU-CUCCacgaUCGAGGCggccACGGCCu -3' miRNA: 3'- -UGUGGUAgGAGG----AGUUCCG----UGUCGGc -5' |
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31855 | 5' | -56.6 | NC_006938.1 | + | 51437 | 0.72 | 0.320765 |
Target: 5'- aAUGCCAUCCUgCUCAucguggaGGGCuucgacauccucgucGCGGCCGg -3' miRNA: 3'- -UGUGGUAGGAgGAGU-------UCCG---------------UGUCGGC- -5' |
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31855 | 5' | -56.6 | NC_006938.1 | + | 53596 | 0.69 | 0.479745 |
Target: 5'- -aGCUGUaCUCC-CAGGGCGCGGUCGa -3' miRNA: 3'- ugUGGUAgGAGGaGUUCCGUGUCGGC- -5' |
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31855 | 5' | -56.6 | NC_006938.1 | + | 61372 | 0.66 | 0.671679 |
Target: 5'- gACAUggagGUCUUCCUCGacGGGguCAGCCu -3' miRNA: 3'- -UGUGg---UAGGAGGAGU--UCCguGUCGGc -5' |
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31855 | 5' | -56.6 | NC_006938.1 | + | 61849 | 0.66 | 0.649954 |
Target: 5'- aACACCAUCUUCUgCAAGcGCAacaccaaguCAGCgGg -3' miRNA: 3'- -UGUGGUAGGAGGaGUUC-CGU---------GUCGgC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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