Results 1 - 20 of 28 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31857 | 5' | -61.9 | NC_006938.1 | + | 33575 | 1.09 | 0.000249 |
Target: 5'- cGUCGGCAACCGUGCCGCCACCGGCUCa -3' miRNA: 3'- -CAGCCGUUGGCACGGCGGUGGCCGAG- -5' |
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31857 | 5' | -61.9 | NC_006938.1 | + | 14534 | 0.76 | 0.080621 |
Target: 5'- --gGGaCGAgUGUGCCGCCAUUGGCUCg -3' miRNA: 3'- cagCC-GUUgGCACGGCGGUGGCCGAG- -5' |
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31857 | 5' | -61.9 | NC_006938.1 | + | 41392 | 0.75 | 0.102968 |
Target: 5'- -cUGGCGucuguguugACCGUGgCGCCACCGGCcCg -3' miRNA: 3'- caGCCGU---------UGGCACgGCGGUGGCCGaG- -5' |
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31857 | 5' | -61.9 | NC_006938.1 | + | 46674 | 0.74 | 0.11591 |
Target: 5'- cGUCGGCAgcuggggagcgcgggGCCGUGUCGCCucuCCagGGCUUc -3' miRNA: 3'- -CAGCCGU---------------UGGCACGGCGGu--GG--CCGAG- -5' |
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31857 | 5' | -61.9 | NC_006938.1 | + | 63447 | 0.73 | 0.134222 |
Target: 5'- cGUgGGCGACCGgcucGCCGCCGCCcuucggaaccuucGGCa- -3' miRNA: 3'- -CAgCCGUUGGCa---CGGCGGUGG-------------CCGag -5' |
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31857 | 5' | -61.9 | NC_006938.1 | + | 39585 | 0.71 | 0.179483 |
Target: 5'- cUCGGaCGA-CGUcGCCGCCACUGGCa- -3' miRNA: 3'- cAGCC-GUUgGCA-CGGCGGUGGCCGag -5' |
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31857 | 5' | -61.9 | NC_006938.1 | + | 30940 | 0.71 | 0.188958 |
Target: 5'- cGUCGGCGGCCaGUGCC-CCAgagaccUCGGCg- -3' miRNA: 3'- -CAGCCGUUGG-CACGGcGGU------GGCCGag -5' |
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31857 | 5' | -61.9 | NC_006938.1 | + | 31539 | 0.71 | 0.193859 |
Target: 5'- -aCGGaCAACC-UGCCaGCCACCacuGGCUCc -3' miRNA: 3'- caGCC-GUUGGcACGG-CGGUGG---CCGAG- -5' |
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31857 | 5' | -61.9 | NC_006938.1 | + | 8704 | 0.71 | 0.193859 |
Target: 5'- uUCGGCGgcccucgugaugGCCGUGUagaGCCACCuGUUCg -3' miRNA: 3'- cAGCCGU------------UGGCACGg--CGGUGGcCGAG- -5' |
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31857 | 5' | -61.9 | NC_006938.1 | + | 55967 | 0.71 | 0.203995 |
Target: 5'- uUCGGCAACCGUGUC-CCGaacaucaCGGCg- -3' miRNA: 3'- cAGCCGUUGGCACGGcGGUg------GCCGag -5' |
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31857 | 5' | -61.9 | NC_006938.1 | + | 10181 | 0.7 | 0.214587 |
Target: 5'- -cCGGCAugugcACCGUGCgaucauaGCCguagcugaagACCGGCUCg -3' miRNA: 3'- caGCCGU-----UGGCACGg------CGG----------UGGCCGAG- -5' |
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31857 | 5' | -61.9 | NC_006938.1 | + | 48179 | 0.7 | 0.219506 |
Target: 5'- cGUCGGCAAagaagauCCGgaugaGCUugguGCCACCGGcCUCg -3' miRNA: 3'- -CAGCCGUU-------GGCa----CGG----CGGUGGCC-GAG- -5' |
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31857 | 5' | -61.9 | NC_006938.1 | + | 51010 | 0.69 | 0.255421 |
Target: 5'- aGUCGGCGcguUCGacGCUGCCACCGGggcCUCc -3' miRNA: 3'- -CAGCCGUu--GGCa-CGGCGGUGGCC---GAG- -5' |
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31857 | 5' | -61.9 | NC_006938.1 | + | 8555 | 0.68 | 0.2815 |
Target: 5'- cUCGGCGcUCGUGCCaGU--CCGGCUCc -3' miRNA: 3'- cAGCCGUuGGCACGG-CGguGGCCGAG- -5' |
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31857 | 5' | -61.9 | NC_006938.1 | + | 1417 | 0.68 | 0.295312 |
Target: 5'- -aCGGCGGCCuUGCUGCCAa-GGCg- -3' miRNA: 3'- caGCCGUUGGcACGGCGGUggCCGag -5' |
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31857 | 5' | -61.9 | NC_006938.1 | + | 29072 | 0.68 | 0.295312 |
Target: 5'- uGUCGG--GCCGUGUCcauCCggACCGGCUCu -3' miRNA: 3'- -CAGCCguUGGCACGGc--GG--UGGCCGAG- -5' |
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31857 | 5' | -61.9 | NC_006938.1 | + | 46031 | 0.68 | 0.298137 |
Target: 5'- -aUGGCAuagaccagguucuggGCCGUcuCCGCCGCCgaGGCUCc -3' miRNA: 3'- caGCCGU---------------UGGCAc-GGCGGUGG--CCGAG- -5' |
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31857 | 5' | -61.9 | NC_006938.1 | + | 41483 | 0.68 | 0.31701 |
Target: 5'- cGUCGGgGACUuUGCCcagGCCGCCGcGCa- -3' miRNA: 3'- -CAGCCgUUGGcACGG---CGGUGGC-CGag -5' |
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31857 | 5' | -61.9 | NC_006938.1 | + | 39228 | 0.67 | 0.33213 |
Target: 5'- uGUCGGUcacGCCuacGUcGCCGCCucGCCGGCa- -3' miRNA: 3'- -CAGCCGu--UGG---CA-CGGCGG--UGGCCGag -5' |
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31857 | 5' | -61.9 | NC_006938.1 | + | 55505 | 0.67 | 0.33213 |
Target: 5'- --gGGCGagaaGCCcagGCCGCCugCGGCg- -3' miRNA: 3'- cagCCGU----UGGca-CGGCGGugGCCGag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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