miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31857 5' -61.9 NC_006938.1 + 1417 0.68 0.295312
Target:  5'- -aCGGCGGCCuUGCUGCCAa-GGCg- -3'
miRNA:   3'- caGCCGUUGGcACGGCGGUggCCGag -5'
31857 5' -61.9 NC_006938.1 + 4183 0.66 0.406565
Target:  5'- -aCGGCuccgacaucgaGACCcUGCUGaCCGCCGaGCUCc -3'
miRNA:   3'- caGCCG-----------UUGGcACGGC-GGUGGC-CGAG- -5'
31857 5' -61.9 NC_006938.1 + 6125 0.67 0.339887
Target:  5'- --gGGCGACUaUGCCggaGCCACgGGCUa -3'
miRNA:   3'- cagCCGUUGGcACGG---CGGUGgCCGAg -5'
31857 5' -61.9 NC_006938.1 + 8555 0.68 0.2815
Target:  5'- cUCGGCGcUCGUGCCaGU--CCGGCUCc -3'
miRNA:   3'- cAGCCGUuGGCACGG-CGguGGCCGAG- -5'
31857 5' -61.9 NC_006938.1 + 8704 0.71 0.193859
Target:  5'- uUCGGCGgcccucgugaugGCCGUGUagaGCCACCuGUUCg -3'
miRNA:   3'- cAGCCGU------------UGGCACGg--CGGUGGcCGAG- -5'
31857 5' -61.9 NC_006938.1 + 10181 0.7 0.214587
Target:  5'- -cCGGCAugugcACCGUGCgaucauaGCCguagcugaagACCGGCUCg -3'
miRNA:   3'- caGCCGU-----UGGCACGg------CGG----------UGGCCGAG- -5'
31857 5' -61.9 NC_006938.1 + 14534 0.76 0.080621
Target:  5'- --gGGaCGAgUGUGCCGCCAUUGGCUCg -3'
miRNA:   3'- cagCC-GUUgGCACGGCGGUGGCCGAG- -5'
31857 5' -61.9 NC_006938.1 + 25526 0.66 0.380612
Target:  5'- -aCGGCAGCUcca-CGUgCACCGGCUCg -3'
miRNA:   3'- caGCCGUUGGcacgGCG-GUGGCCGAG- -5'
31857 5' -61.9 NC_006938.1 + 26808 0.66 0.380612
Target:  5'- -cUGGCGauGCCGacGuaGCCACCGGuCUCg -3'
miRNA:   3'- caGCCGU--UGGCa-CggCGGUGGCC-GAG- -5'
31857 5' -61.9 NC_006938.1 + 27399 0.66 0.389139
Target:  5'- cGUCuGGgGACCGUGCUccuggauguauGCCACC-GCUg -3'
miRNA:   3'- -CAG-CCgUUGGCACGG-----------CGGUGGcCGAg -5'
31857 5' -61.9 NC_006938.1 + 29072 0.68 0.295312
Target:  5'- uGUCGG--GCCGUGUCcauCCggACCGGCUCu -3'
miRNA:   3'- -CAGCCguUGGCACGGc--GG--UGGCCGAG- -5'
31857 5' -61.9 NC_006938.1 + 30940 0.71 0.188958
Target:  5'- cGUCGGCGGCCaGUGCC-CCAgagaccUCGGCg- -3'
miRNA:   3'- -CAGCCGUUGG-CACGGcGGU------GGCCGag -5'
31857 5' -61.9 NC_006938.1 + 31539 0.71 0.193859
Target:  5'- -aCGGaCAACC-UGCCaGCCACCacuGGCUCc -3'
miRNA:   3'- caGCC-GUUGGcACGG-CGGUGG---CCGAG- -5'
31857 5' -61.9 NC_006938.1 + 33575 1.09 0.000249
Target:  5'- cGUCGGCAACCGUGCCGCCACCGGCUCa -3'
miRNA:   3'- -CAGCCGUUGGCACGGCGGUGGCCGAG- -5'
31857 5' -61.9 NC_006938.1 + 38154 0.66 0.406565
Target:  5'- uGUCGGgAGCCGgugGCaugGuCCACUuGGCUCc -3'
miRNA:   3'- -CAGCCgUUGGCa--CGg--C-GGUGG-CCGAG- -5'
31857 5' -61.9 NC_006938.1 + 38252 0.66 0.397791
Target:  5'- --gGGgAGCCaaGUGgaccaUGCCACCGGCUCc -3'
miRNA:   3'- cagCCgUUGG--CACg----GCGGUGGCCGAG- -5'
31857 5' -61.9 NC_006938.1 + 39228 0.67 0.33213
Target:  5'- uGUCGGUcacGCCuacGUcGCCGCCucGCCGGCa- -3'
miRNA:   3'- -CAGCCGu--UGG---CA-CGGCGG--UGGCCGag -5'
31857 5' -61.9 NC_006938.1 + 39585 0.71 0.179483
Target:  5'- cUCGGaCGA-CGUcGCCGCCACUGGCa- -3'
miRNA:   3'- cAGCC-GUUgGCA-CGGCGGUGGCCGag -5'
31857 5' -61.9 NC_006938.1 + 41392 0.75 0.102968
Target:  5'- -cUGGCGucuguguugACCGUGgCGCCACCGGCcCg -3'
miRNA:   3'- caGCCGU---------UGGCACgGCGGUGGCCGaG- -5'
31857 5' -61.9 NC_006938.1 + 41483 0.68 0.31701
Target:  5'- cGUCGGgGACUuUGCCcagGCCGCCGcGCa- -3'
miRNA:   3'- -CAGCCgUUGGcACGG---CGGUGGC-CGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.