Results 1 - 20 of 28 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31861 | 5' | -60.1 | NC_006938.1 | + | 37039 | 1.12 | 0.000307 |
Target: 5'- gCGGGACAUGACCCGGCCCCUGUCACCg -3' miRNA: 3'- -GCCCUGUACUGGGCCGGGGACAGUGG- -5' |
|||||||
31861 | 5' | -60.1 | NC_006938.1 | + | 24444 | 0.77 | 0.106864 |
Target: 5'- uGGGACAUGGgcUUCGGCCCgUGgCACCg -3' miRNA: 3'- gCCCUGUACU--GGGCCGGGgACaGUGG- -5' |
|||||||
31861 | 5' | -60.1 | NC_006938.1 | + | 9417 | 0.74 | 0.163109 |
Target: 5'- uGGGACuggGccgaGCCCGGCaCCCUGuUCAUCg -3' miRNA: 3'- gCCCUGua-C----UGGGCCG-GGGAC-AGUGG- -5' |
|||||||
31861 | 5' | -60.1 | NC_006938.1 | + | 61679 | 0.71 | 0.263246 |
Target: 5'- uCGGcGGCGcGGCCCGGaCCUCUGUgACg -3' miRNA: 3'- -GCC-CUGUaCUGGGCC-GGGGACAgUGg -5' |
|||||||
31861 | 5' | -60.1 | NC_006938.1 | + | 12520 | 0.71 | 0.269704 |
Target: 5'- gCGGGACA-GcCCCGGCCCgaGguuCCg -3' miRNA: 3'- -GCCCUGUaCuGGGCCGGGgaCaguGG- -5' |
|||||||
31861 | 5' | -60.1 | NC_006938.1 | + | 3933 | 0.71 | 0.276289 |
Target: 5'- gGGGAUA-GACguugaaCGGCCCCUcGUCgACCg -3' miRNA: 3'- gCCCUGUaCUGg-----GCCGGGGA-CAG-UGG- -5' |
|||||||
31861 | 5' | -60.1 | NC_006938.1 | + | 23068 | 0.71 | 0.283002 |
Target: 5'- cCGGGuuUAUGACgUaGCCCCUGUCcaGCCg -3' miRNA: 3'- -GCCCu-GUACUGgGcCGGGGACAG--UGG- -5' |
|||||||
31861 | 5' | -60.1 | NC_006938.1 | + | 2770 | 0.71 | 0.289844 |
Target: 5'- gCGGGACAgguUGGcggugguucCCCGGCuuccguucggaCCCUcGUCGCCg -3' miRNA: 3'- -GCCCUGU---ACU---------GGGCCG-----------GGGA-CAGUGG- -5' |
|||||||
31861 | 5' | -60.1 | NC_006938.1 | + | 27474 | 0.7 | 0.303915 |
Target: 5'- aCGaGGAgAUGgagagcggauACCCGGUCUCcGUCACCg -3' miRNA: 3'- -GC-CCUgUAC----------UGGGCCGGGGaCAGUGG- -5' |
|||||||
31861 | 5' | -60.1 | NC_006938.1 | + | 9505 | 0.7 | 0.325994 |
Target: 5'- aGGGuGCcgGGCUCGGCCCa-GUC-CCa -3' miRNA: 3'- gCCC-UGuaCUGGGCCGGGgaCAGuGG- -5' |
|||||||
31861 | 5' | -60.1 | NC_006938.1 | + | 41800 | 0.69 | 0.349243 |
Target: 5'- -aGGACAgcagGGCCaacggacaGGCCUCUGUCggGCCg -3' miRNA: 3'- gcCCUGUa---CUGGg-------CCGGGGACAG--UGG- -5' |
|||||||
31861 | 5' | -60.1 | NC_006938.1 | + | 58672 | 0.69 | 0.365386 |
Target: 5'- gGGGACAguGCCCGGCCauccaCgagCGCCc -3' miRNA: 3'- gCCCUGUacUGGGCCGGg----GacaGUGG- -5' |
|||||||
31861 | 5' | -60.1 | NC_006938.1 | + | 23868 | 0.69 | 0.373648 |
Target: 5'- aGGGccggugcgcugaGCGUGACaCCGGCCCUccGUCugACCc -3' miRNA: 3'- gCCC------------UGUACUG-GGCCGGGGa-CAG--UGG- -5' |
|||||||
31861 | 5' | -60.1 | NC_006938.1 | + | 1524 | 0.68 | 0.399185 |
Target: 5'- gCGGuGGCAgguagUGcACCCGGCCCgUGgcgACCg -3' miRNA: 3'- -GCC-CUGU-----AC-UGGGCCGGGgACag-UGG- -5' |
|||||||
31861 | 5' | -60.1 | NC_006938.1 | + | 28445 | 0.68 | 0.399185 |
Target: 5'- aGGGACAgcUGuccagccaucACCuUGGCCCCggacuugcugGUCGCCu -3' miRNA: 3'- gCCCUGU--AC----------UGG-GCCGGGGa---------CAGUGG- -5' |
|||||||
31861 | 5' | -60.1 | NC_006938.1 | + | 29659 | 0.68 | 0.434004 |
Target: 5'- gGaGGAUcUGGCUCGacgagccGCCCCUGcCGCCg -3' miRNA: 3'- gC-CCUGuACUGGGC-------CGGGGACaGUGG- -5' |
|||||||
31861 | 5' | -60.1 | NC_006938.1 | + | 46161 | 0.68 | 0.434919 |
Target: 5'- aCGGGACuucGGCUCGcaGCCCCUGgaguuuCCg -3' miRNA: 3'- -GCCCUGua-CUGGGC--CGGGGACagu---GG- -5' |
|||||||
31861 | 5' | -60.1 | NC_006938.1 | + | 36295 | 0.67 | 0.48207 |
Target: 5'- gGGGuCGUGACCCGauggcGUCCCcGUCGa- -3' miRNA: 3'- gCCCuGUACUGGGC-----CGGGGaCAGUgg -5' |
|||||||
31861 | 5' | -60.1 | NC_006938.1 | + | 27608 | 0.67 | 0.48207 |
Target: 5'- gCGGGuGCGUGGCCCcGCaguCCUGgCAUCg -3' miRNA: 3'- -GCCC-UGUACUGGGcCGg--GGACaGUGG- -5' |
|||||||
31861 | 5' | -60.1 | NC_006938.1 | + | 29363 | 0.67 | 0.48207 |
Target: 5'- uGGcGAUGUGcaACCUGGCCaaCCUG-CGCCu -3' miRNA: 3'- gCC-CUGUAC--UGGGCCGG--GGACaGUGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home