miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31861 5' -60.1 NC_006938.1 + 1524 0.68 0.399185
Target:  5'- gCGGuGGCAgguagUGcACCCGGCCCgUGgcgACCg -3'
miRNA:   3'- -GCC-CUGU-----AC-UGGGCCGGGgACag-UGG- -5'
31861 5' -60.1 NC_006938.1 + 2770 0.71 0.289844
Target:  5'- gCGGGACAgguUGGcggugguucCCCGGCuuccguucggaCCCUcGUCGCCg -3'
miRNA:   3'- -GCCCUGU---ACU---------GGGCCG-----------GGGA-CAGUGG- -5'
31861 5' -60.1 NC_006938.1 + 3933 0.71 0.276289
Target:  5'- gGGGAUA-GACguugaaCGGCCCCUcGUCgACCg -3'
miRNA:   3'- gCCCUGUaCUGg-----GCCGGGGA-CAG-UGG- -5'
31861 5' -60.1 NC_006938.1 + 4671 0.66 0.511518
Target:  5'- gGGGACAUG-CUC-GCCUCUGaCACg -3'
miRNA:   3'- gCCCUGUACuGGGcCGGGGACaGUGg -5'
31861 5' -60.1 NC_006938.1 + 9417 0.74 0.163109
Target:  5'- uGGGACuggGccgaGCCCGGCaCCCUGuUCAUCg -3'
miRNA:   3'- gCCCUGua-C----UGGGCCG-GGGAC-AGUGG- -5'
31861 5' -60.1 NC_006938.1 + 9505 0.7 0.325994
Target:  5'- aGGGuGCcgGGCUCGGCCCa-GUC-CCa -3'
miRNA:   3'- gCCC-UGuaCUGGGCCGGGgaCAGuGG- -5'
31861 5' -60.1 NC_006938.1 + 12520 0.71 0.269704
Target:  5'- gCGGGACA-GcCCCGGCCCgaGguuCCg -3'
miRNA:   3'- -GCCCUGUaCuGGGCCGGGgaCaguGG- -5'
31861 5' -60.1 NC_006938.1 + 15836 0.66 0.5215
Target:  5'- uGGGACcagGACCUGGUcauguUCCUGgacgaGCCg -3'
miRNA:   3'- gCCCUGua-CUGGGCCG-----GGGACag---UGG- -5'
31861 5' -60.1 NC_006938.1 + 15923 0.66 0.541685
Target:  5'- aGGaACAUGACCaGGUCCUgGUC-CCa -3'
miRNA:   3'- gCCcUGUACUGGgCCGGGGaCAGuGG- -5'
31861 5' -60.1 NC_006938.1 + 23068 0.71 0.283002
Target:  5'- cCGGGuuUAUGACgUaGCCCCUGUCcaGCCg -3'
miRNA:   3'- -GCCCu-GUACUGgGcCGGGGACAG--UGG- -5'
31861 5' -60.1 NC_006938.1 + 23868 0.69 0.373648
Target:  5'- aGGGccggugcgcugaGCGUGACaCCGGCCCUccGUCugACCc -3'
miRNA:   3'- gCCC------------UGUACUG-GGCCGGGGa-CAG--UGG- -5'
31861 5' -60.1 NC_006938.1 + 24444 0.77 0.106864
Target:  5'- uGGGACAUGGgcUUCGGCCCgUGgCACCg -3'
miRNA:   3'- gCCCUGUACU--GGGCCGGGgACaGUGG- -5'
31861 5' -60.1 NC_006938.1 + 27474 0.7 0.303915
Target:  5'- aCGaGGAgAUGgagagcggauACCCGGUCUCcGUCACCg -3'
miRNA:   3'- -GC-CCUgUAC----------UGGGCCGGGGaCAGUGG- -5'
31861 5' -60.1 NC_006938.1 + 27608 0.67 0.48207
Target:  5'- gCGGGuGCGUGGCCCcGCaguCCUGgCAUCg -3'
miRNA:   3'- -GCCC-UGUACUGGGcCGg--GGACaGUGG- -5'
31861 5' -60.1 NC_006938.1 + 28445 0.68 0.399185
Target:  5'- aGGGACAgcUGuccagccaucACCuUGGCCCCggacuugcugGUCGCCu -3'
miRNA:   3'- gCCCUGU--AC----------UGG-GCCGGGGa---------CAGUGG- -5'
31861 5' -60.1 NC_006938.1 + 29363 0.67 0.48207
Target:  5'- uGGcGAUGUGcaACCUGGCCaaCCUG-CGCCu -3'
miRNA:   3'- gCC-CUGUAC--UGGGCCGG--GGACaGUGG- -5'
31861 5' -60.1 NC_006938.1 + 29659 0.68 0.434004
Target:  5'- gGaGGAUcUGGCUCGacgagccGCCCCUGcCGCCg -3'
miRNA:   3'- gC-CCUGuACUGGGC-------CGGGGACaGUGG- -5'
31861 5' -60.1 NC_006938.1 + 30098 0.66 0.501615
Target:  5'- uGGcuCAUGagcuGCCaCGGCCaCCUGUCugCu -3'
miRNA:   3'- gCCcuGUAC----UGG-GCCGG-GGACAGugG- -5'
31861 5' -60.1 NC_006938.1 + 34508 0.66 0.550853
Target:  5'- aGGGGCGgcUGGUCUGGCUCCggcacgaUGUCGCa -3'
miRNA:   3'- gCCCUGU--ACUGGGCCGGGG-------ACAGUGg -5'
31861 5' -60.1 NC_006938.1 + 36295 0.67 0.48207
Target:  5'- gGGGuCGUGACCCGauggcGUCCCcGUCGa- -3'
miRNA:   3'- gCCCuGUACUGGGC-----CGGGGaCAGUgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.