miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31863 5' -52.2 NC_006938.1 + 30417 0.66 0.839723
Target:  5'- aGAGGGAGGGGAaGaCGGGcuGAcccGGCu -3'
miRNA:   3'- -CUCCCUCCUCU-CgGUCCu-CU---UCG- -5'
31863 5' -52.2 NC_006938.1 + 19313 0.66 0.839723
Target:  5'- cAGGGcGGAG-GCC-GGAGGuGGCa -3'
miRNA:   3'- cUCCCuCCUCuCGGuCCUCU-UCG- -5'
31863 5' -52.2 NC_006938.1 + 58420 0.66 0.830426
Target:  5'- aGAGGGAGGAaGAaCUcGGAGAccgcguGGCu -3'
miRNA:   3'- -CUCCCUCCU-CUcGGuCCUCU------UCG- -5'
31863 5' -52.2 NC_006938.1 + 11582 0.66 0.830426
Target:  5'- cAGGuGGcGGAGGccuuuggcuuccGUCGGGAGAAGCu -3'
miRNA:   3'- cUCC-CU-CCUCU------------CGGUCCUCUUCG- -5'
31863 5' -52.2 NC_006938.1 + 35021 0.66 0.8209
Target:  5'- cGA-GGAGGAGAuccgcaagauCCAGGAGGAGg -3'
miRNA:   3'- -CUcCCUCCUCUc---------GGUCCUCUUCg -5'
31863 5' -52.2 NC_006938.1 + 18716 0.66 0.811157
Target:  5'- -uGGGcucugcuacGGGAuGGGaCAGGAGAAGCu -3'
miRNA:   3'- cuCCC---------UCCU-CUCgGUCCUCUUCG- -5'
31863 5' -52.2 NC_006938.1 + 17936 0.67 0.780745
Target:  5'- uGAGGauccuGGAGcuCCAGGAGAAGg -3'
miRNA:   3'- -CUCCcu---CCUCucGGUCCUCUUCg -5'
31863 5' -52.2 NC_006938.1 + 4277 0.67 0.748818
Target:  5'- gGAGGacguGAacGGAGAGCC-GGuGGAGCg -3'
miRNA:   3'- -CUCC----CU--CCUCUCGGuCCuCUUCG- -5'
31863 5' -52.2 NC_006938.1 + 9147 0.67 0.748818
Target:  5'- -uGGGAcGGAGGGU--GGAGAAGUc -3'
miRNA:   3'- cuCCCU-CCUCUCGguCCUCUUCG- -5'
31863 5' -52.2 NC_006938.1 + 34202 0.68 0.737899
Target:  5'- aGAGGGAcaaGGAcuucGAGUggguguggCAGGAGAAGUa -3'
miRNA:   3'- -CUCCCU---CCU----CUCG--------GUCCUCUUCG- -5'
31863 5' -52.2 NC_006938.1 + 24668 0.7 0.612933
Target:  5'- cAGGGAGGAGAaGCCGcGAGcgcGCa -3'
miRNA:   3'- cUCCCUCCUCU-CGGUcCUCuu-CG- -5'
31863 5' -52.2 NC_006938.1 + 45684 0.7 0.578582
Target:  5'- gGAGcGGAcu-GAGCCAGGAGcAGCa -3'
miRNA:   3'- -CUC-CCUccuCUCGGUCCUCuUCG- -5'
31863 5' -52.2 NC_006938.1 + 55675 0.71 0.555906
Target:  5'- -uGGGAGGAGGGCCcaAGcAGAcGCa -3'
miRNA:   3'- cuCCCUCCUCUCGG--UCcUCUuCG- -5'
31863 5' -52.2 NC_006938.1 + 35653 0.71 0.555906
Target:  5'- cGAGGuguggcgcGAGGAGAugcuguccgucGCCAgGGAGGAGCc -3'
miRNA:   3'- -CUCC--------CUCCUCU-----------CGGU-CCUCUUCG- -5'
31863 5' -52.2 NC_006938.1 + 37868 0.72 0.4477
Target:  5'- -uGGcuccAGGAGAuCCAGGAGAAGCg -3'
miRNA:   3'- cuCCc---UCCUCUcGGUCCUCUUCG- -5'
31863 5' -52.2 NC_006938.1 + 26769 0.73 0.427452
Target:  5'- uGAGGGAGGcAGAGau-GGAGAAGa -3'
miRNA:   3'- -CUCCCUCC-UCUCgguCCUCUUCg -5'
31863 5' -52.2 NC_006938.1 + 8785 0.75 0.343488
Target:  5'- gGAGaGGGGGAGAGCUucagagAGGGGAugGGCc -3'
miRNA:   3'- -CUC-CCUCCUCUCGG------UCCUCU--UCG- -5'
31863 5' -52.2 NC_006938.1 + 7153 0.8 0.160756
Target:  5'- gGAGGGAGGuGGAGCCGGGGcGAcGCc -3'
miRNA:   3'- -CUCCCUCC-UCUCGGUCCU-CUuCG- -5'
31863 5' -52.2 NC_006938.1 + 34725 0.81 0.139187
Target:  5'- cAGGGAGcGGGAGUCAGGcGAGGCa -3'
miRNA:   3'- cUCCCUC-CUCUCGGUCCuCUUCG- -5'
31863 5' -52.2 NC_006938.1 + 34528 0.83 0.103821
Target:  5'- cGAGGuuGGAGAGCCcaAGGAGggGCg -3'
miRNA:   3'- -CUCCcuCCUCUCGG--UCCUCuuCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.