miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31873 3' -57.6 NC_006938.1 + 20823 0.66 0.636602
Target:  5'- cUACCGcCGCCGCG-CGGGCa----- -3'
miRNA:   3'- aGUGGCuGCGGCGCgGCCUGaaacag -5'
31873 3' -57.6 NC_006938.1 + 8033 0.66 0.636602
Target:  5'- uUCACgGAgGCCaaGCCGGACa----- -3'
miRNA:   3'- -AGUGgCUgCGGcgCGGCCUGaaacag -5'
31873 3' -57.6 NC_006938.1 + 40705 0.66 0.625909
Target:  5'- aCGCUGGCccGCCGCGC-GGACUUc--- -3'
miRNA:   3'- aGUGGCUG--CGGCGCGgCCUGAAacag -5'
31873 3' -57.6 NC_006938.1 + 47686 0.67 0.604548
Target:  5'- --uCCGGCGCCGUgacGCCGGuga-UGUCc -3'
miRNA:   3'- aguGGCUGCGGCG---CGGCCugaaACAG- -5'
31873 3' -57.6 NC_006938.1 + 27009 0.67 0.583277
Target:  5'- gUCACgG--GCCGCGCCGGuccACUUggaguggGUCa -3'
miRNA:   3'- -AGUGgCugCGGCGCGGCC---UGAAa------CAG- -5'
31873 3' -57.6 NC_006938.1 + 1795 0.67 0.583277
Target:  5'- -uGCCGAcCGCCGCGCgaccccugucCGGGCUUc--- -3'
miRNA:   3'- agUGGCU-GCGGCGCG----------GCCUGAAacag -5'
31873 3' -57.6 NC_006938.1 + 47601 0.67 0.551675
Target:  5'- aUCACCGGCGUCacgGCGaCCGGAUa----- -3'
miRNA:   3'- -AGUGGCUGCGG---CGC-GGCCUGaaacag -5'
31873 3' -57.6 NC_006938.1 + 41845 0.68 0.541252
Target:  5'- aCACCGGCucuGUCGgGCUGGAgUUgccGUCg -3'
miRNA:   3'- aGUGGCUG---CGGCgCGGCCUgAAa--CAG- -5'
31873 3' -57.6 NC_006938.1 + 50196 0.68 0.541252
Target:  5'- aCACCGGCuacuCCGCccaggcaccgGCUGG-CUUUGUCg -3'
miRNA:   3'- aGUGGCUGc---GGCG----------CGGCCuGAAACAG- -5'
31873 3' -57.6 NC_006938.1 + 26929 0.68 0.530896
Target:  5'- -gACCGGCGCgGC-CCGuGACUgggccUGUCc -3'
miRNA:   3'- agUGGCUGCGgCGcGGC-CUGAa----ACAG- -5'
31873 3' -57.6 NC_006938.1 + 5916 0.68 0.500287
Target:  5'- gUCAgCGACGCUGCGCUc--CUUUGUg -3'
miRNA:   3'- -AGUgGCUGCGGCGCGGccuGAAACAg -5'
31873 3' -57.6 NC_006938.1 + 9661 0.69 0.480321
Target:  5'- aCGCgGuCGuCCGCGCCauGGACaacgUUGUCg -3'
miRNA:   3'- aGUGgCuGC-GGCGCGG--CCUGa---AACAG- -5'
31873 3' -57.6 NC_006938.1 + 22750 0.69 0.441611
Target:  5'- cUC-CCGGCGCUucaugGUGCUGGACg-UGUCg -3'
miRNA:   3'- -AGuGGCUGCGG-----CGCGGCCUGaaACAG- -5'
31873 3' -57.6 NC_006938.1 + 41146 0.7 0.40473
Target:  5'- cCGCUGGCuccuucGCCGCGCgGGACcgaGUCa -3'
miRNA:   3'- aGUGGCUG------CGGCGCGgCCUGaaaCAG- -5'
31873 3' -57.6 NC_006938.1 + 36628 0.71 0.345078
Target:  5'- aCGCCGACGUcuCGCGaCGGGCcagGUCg -3'
miRNA:   3'- aGUGGCUGCG--GCGCgGCCUGaaaCAG- -5'
31873 3' -57.6 NC_006938.1 + 10704 0.71 0.337089
Target:  5'- cCACCGAgCGCCugacgGUGUCGGGCgugGUCa -3'
miRNA:   3'- aGUGGCU-GCGG-----CGCGGCCUGaaaCAG- -5'
31873 3' -57.6 NC_006938.1 + 40432 1.09 0.000771
Target:  5'- aUCACCGACGCCGCGCCGGACUUUGUCc -3'
miRNA:   3'- -AGUGGCUGCGGCGCGGCCUGAAACAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.