miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31881 5' -56.2 NC_006938.1 + 35006 0.66 0.711291
Target:  5'- cGCggCCaugaUCUGGACC--AGGUcGGCCg -3'
miRNA:   3'- -CGuaGGg---AGACCUGGagUUCGuCCGG- -5'
31881 5' -56.2 NC_006938.1 + 33909 0.66 0.689962
Target:  5'- aGCGUCCCUCacgauguccgGGACCacggCucGCAG-CCg -3'
miRNA:   3'- -CGUAGGGAGa---------CCUGGa---GuuCGUCcGG- -5'
31881 5' -56.2 NC_006938.1 + 38695 0.66 0.689962
Target:  5'- cGCGUUCUaCUGGACUcggcgUCuc-CAGGCCg -3'
miRNA:   3'- -CGUAGGGaGACCUGG-----AGuucGUCCGG- -5'
31881 5' -56.2 NC_006938.1 + 51818 0.66 0.679211
Target:  5'- ---cCCCUCUGGGcaucgaagcCCUCGgagaAGCcuguGGCCa -3'
miRNA:   3'- cguaGGGAGACCU---------GGAGU----UCGu---CCGG- -5'
31881 5' -56.2 NC_006938.1 + 21756 0.66 0.679211
Target:  5'- gGCAgguugCCCgacagCUGGACCgCGcGC-GGCCc -3'
miRNA:   3'- -CGUa----GGGa----GACCUGGaGUuCGuCCGG- -5'
31881 5' -56.2 NC_006938.1 + 37909 0.66 0.668417
Target:  5'- cGCGUCUCa--GGGCggCGAGCGGGCg -3'
miRNA:   3'- -CGUAGGGagaCCUGgaGUUCGUCCGg -5'
31881 5' -56.2 NC_006938.1 + 60372 0.67 0.657589
Target:  5'- aGCAUCUCUCUacGCCaguuGCAGGUCg -3'
miRNA:   3'- -CGUAGGGAGAccUGGaguuCGUCCGG- -5'
31881 5' -56.2 NC_006938.1 + 5592 0.67 0.657589
Target:  5'- cGCcgCUCUCgaGGccaAgCUCAAGgAGGCCa -3'
miRNA:   3'- -CGuaGGGAGa-CC---UgGAGUUCgUCCGG- -5'
31881 5' -56.2 NC_006938.1 + 23802 0.67 0.646738
Target:  5'- gGCA-CCaCUCaGGGCgcgCUCGAGCAucucGGCCa -3'
miRNA:   3'- -CGUaGG-GAGaCCUG---GAGUUCGU----CCGG- -5'
31881 5' -56.2 NC_006938.1 + 5577 0.67 0.625008
Target:  5'- cGCGUCCUggUGGuCCUCG-GCGuacucGGCCc -3'
miRNA:   3'- -CGUAGGGagACCuGGAGUuCGU-----CCGG- -5'
31881 5' -56.2 NC_006938.1 + 9967 0.67 0.603301
Target:  5'- cGCG-CCCUucucCUGGGCCagcUCGAcGgAGGCCu -3'
miRNA:   3'- -CGUaGGGA----GACCUGG---AGUU-CgUCCGG- -5'
31881 5' -56.2 NC_006938.1 + 13144 0.67 0.603301
Target:  5'- -gGUCCCgugcaaCUGGAaCgauGGCAGGCCg -3'
miRNA:   3'- cgUAGGGa-----GACCUgGaguUCGUCCGG- -5'
31881 5' -56.2 NC_006938.1 + 11690 0.67 0.602217
Target:  5'- uGCaAUCaCUUCUGGAacagcccggagaaCCgCGAGCAGGCa -3'
miRNA:   3'- -CG-UAG-GGAGACCU-------------GGaGUUCGUCCGg -5'
31881 5' -56.2 NC_006938.1 + 18171 0.68 0.592479
Target:  5'- gGCAUCCUggUGGAcgcCCUCc-GCGcGGCCg -3'
miRNA:   3'- -CGUAGGGagACCU---GGAGuuCGU-CCGG- -5'
31881 5' -56.2 NC_006938.1 + 47751 0.68 0.592479
Target:  5'- ----aCCUCUGG-CCUCGuGCuggAGGCCu -3'
miRNA:   3'- cguagGGAGACCuGGAGUuCG---UCCGG- -5'
31881 5' -56.2 NC_006938.1 + 37447 0.68 0.592479
Target:  5'- gGCAUCCCUCggcgucugGGGCgagCUCAaucacgAGgAGGUCa -3'
miRNA:   3'- -CGUAGGGAGa-------CCUG---GAGU------UCgUCCGG- -5'
31881 5' -56.2 NC_006938.1 + 48017 0.68 0.58169
Target:  5'- gGCAUCaCgCUCgacaaGACCUCGGGCGGcGCg -3'
miRNA:   3'- -CGUAG-G-GAGac---CUGGAGUUCGUC-CGg -5'
31881 5' -56.2 NC_006938.1 + 46175 0.68 0.58169
Target:  5'- cGCAgCCC-CUGGAguuuCCgCGcGCGGGCCu -3'
miRNA:   3'- -CGUaGGGaGACCU----GGaGUuCGUCCGG- -5'
31881 5' -56.2 NC_006938.1 + 29897 0.68 0.58169
Target:  5'- cGCGaUCCUgUGGAUCUggucCGGGCuGGCCc -3'
miRNA:   3'- -CGUaGGGAgACCUGGA----GUUCGuCCGG- -5'
31881 5' -56.2 NC_006938.1 + 5695 0.68 0.570942
Target:  5'- gGCGUUCCU-UGGccuCCUUGAGCuuGGCCu -3'
miRNA:   3'- -CGUAGGGAgACCu--GGAGUUCGu-CCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.