miRNA display CGI


Results 21 - 40 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31881 5' -56.2 NC_006938.1 + 37873 0.69 0.507728
Target:  5'- cGUcgUCCUCgcGGACCUCGAagauGCGaucGGCCa -3'
miRNA:   3'- -CGuaGGGAGa-CCUGGAGUU----CGU---CCGG- -5'
31881 5' -56.2 NC_006938.1 + 2099 0.69 0.507728
Target:  5'- aGCGUCCgUCUgagaGGACCUCcacgaucAGCGcGCCa -3'
miRNA:   3'- -CGUAGGgAGA----CCUGGAGu------UCGUcCGG- -5'
31881 5' -56.2 NC_006938.1 + 63429 0.7 0.438042
Target:  5'- cGCcgCCCUUcGGaACCUUcGGCAGGUg -3'
miRNA:   3'- -CGuaGGGAGaCC-UGGAGuUCGUCCGg -5'
31881 5' -56.2 NC_006938.1 + 2988 0.72 0.374163
Target:  5'- -gGUCCgCUC-GGACUUCGAGuCAGGUCc -3'
miRNA:   3'- cgUAGG-GAGaCCUGGAGUUC-GUCCGG- -5'
31881 5' -56.2 NC_006938.1 + 4136 0.72 0.365567
Target:  5'- cGCGUCCUUCUucaGGAcCCUUGAGCuguguGGCUu -3'
miRNA:   3'- -CGUAGGGAGA---CCU-GGAGUUCGu----CCGG- -5'
31881 5' -56.2 NC_006938.1 + 21184 0.73 0.316901
Target:  5'- aGCAUCCgCUCgugcugGGGCCggAAGguGGUCg -3'
miRNA:   3'- -CGUAGG-GAGa-----CCUGGagUUCguCCGG- -5'
31881 5' -56.2 NC_006938.1 + 1209 0.74 0.290124
Target:  5'- uGCAugUCCUUCUGGACCUCGAuCGGaucggagggguccacGCCa -3'
miRNA:   3'- -CGU--AGGGAGACCUGGAGUUcGUC---------------CGG- -5'
31881 5' -56.2 NC_006938.1 + 35738 0.68 0.56131
Target:  5'- aGCAUCuCCUCgcgccacaccucggcGGACUUCuc-CAGGCCu -3'
miRNA:   3'- -CGUAG-GGAGa--------------CCUGGAGuucGUCCGG- -5'
31881 5' -56.2 NC_006938.1 + 39223 0.68 0.570942
Target:  5'- gGCGUUccaCCUCggucgGGACCUU-GGCGGaGCCg -3'
miRNA:   3'- -CGUAG---GGAGa----CCUGGAGuUCGUC-CGG- -5'
31881 5' -56.2 NC_006938.1 + 5695 0.68 0.570942
Target:  5'- gGCGUUCCU-UGGccuCCUUGAGCuuGGCCu -3'
miRNA:   3'- -CGUAGGGAgACCu--GGAGUUCGu-CCGG- -5'
31881 5' -56.2 NC_006938.1 + 35006 0.66 0.711291
Target:  5'- cGCggCCaugaUCUGGACC--AGGUcGGCCg -3'
miRNA:   3'- -CGuaGGg---AGACCUGGagUUCGuCCGG- -5'
31881 5' -56.2 NC_006938.1 + 33909 0.66 0.689962
Target:  5'- aGCGUCCCUCacgauguccgGGACCacggCucGCAG-CCg -3'
miRNA:   3'- -CGUAGGGAGa---------CCUGGa---GuuCGUCcGG- -5'
31881 5' -56.2 NC_006938.1 + 21756 0.66 0.679211
Target:  5'- gGCAgguugCCCgacagCUGGACCgCGcGC-GGCCc -3'
miRNA:   3'- -CGUa----GGGa----GACCUGGaGUuCGuCCGG- -5'
31881 5' -56.2 NC_006938.1 + 51818 0.66 0.679211
Target:  5'- ---cCCCUCUGGGcaucgaagcCCUCGgagaAGCcuguGGCCa -3'
miRNA:   3'- cguaGGGAGACCU---------GGAGU----UCGu---CCGG- -5'
31881 5' -56.2 NC_006938.1 + 60372 0.67 0.657589
Target:  5'- aGCAUCUCUCUacGCCaguuGCAGGUCg -3'
miRNA:   3'- -CGUAGGGAGAccUGGaguuCGUCCGG- -5'
31881 5' -56.2 NC_006938.1 + 23802 0.67 0.646738
Target:  5'- gGCA-CCaCUCaGGGCgcgCUCGAGCAucucGGCCa -3'
miRNA:   3'- -CGUaGG-GAGaCCUG---GAGUUCGU----CCGG- -5'
31881 5' -56.2 NC_006938.1 + 5577 0.67 0.625008
Target:  5'- cGCGUCCUggUGGuCCUCG-GCGuacucGGCCc -3'
miRNA:   3'- -CGUAGGGagACCuGGAGUuCGU-----CCGG- -5'
31881 5' -56.2 NC_006938.1 + 9967 0.67 0.603301
Target:  5'- cGCG-CCCUucucCUGGGCCagcUCGAcGgAGGCCu -3'
miRNA:   3'- -CGUaGGGA----GACCUGG---AGUU-CgUCCGG- -5'
31881 5' -56.2 NC_006938.1 + 29897 0.68 0.58169
Target:  5'- cGCGaUCCUgUGGAUCUggucCGGGCuGGCCc -3'
miRNA:   3'- -CGUaGGGAgACCUGGA----GUUCGuCCGG- -5'
31881 5' -56.2 NC_006938.1 + 8434 0.74 0.266494
Target:  5'- cGCgAUCCagaUCUGG-CCgUUGAGCAGGCCc -3'
miRNA:   3'- -CG-UAGGg--AGACCuGG-AGUUCGUCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.