miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31882 5' -62.1 NC_006938.1 + 46589 1.1 0.00026
Target:  5'- cCCGCGCUCCCCAGCUGCCGACGAGGAg -3'
miRNA:   3'- -GGCGCGAGGGGUCGACGGCUGCUCCU- -5'
31882 5' -62.1 NC_006938.1 + 41696 0.8 0.05039
Target:  5'- gCGCGCUCCCCuGGCcgUGCCGACGuuGAu -3'
miRNA:   3'- gGCGCGAGGGG-UCG--ACGGCUGCucCU- -5'
31882 5' -62.1 NC_006938.1 + 20026 0.77 0.077909
Target:  5'- -gGCGCUCCCUGGaguccuccacGCCGACGGGGAa -3'
miRNA:   3'- ggCGCGAGGGGUCga--------CGGCUGCUCCU- -5'
31882 5' -62.1 NC_006938.1 + 58139 0.74 0.119481
Target:  5'- -gGCGUUgaucgucacgCCCCAGUcugUGCCGGCGAGGGc -3'
miRNA:   3'- ggCGCGA----------GGGGUCG---ACGGCUGCUCCU- -5'
31882 5' -62.1 NC_006938.1 + 52401 0.73 0.147322
Target:  5'- gUCGaUGCcgCCCUGGCcGCCGAUGAGGAu -3'
miRNA:   3'- -GGC-GCGa-GGGGUCGaCGGCUGCUCCU- -5'
31882 5' -62.1 NC_006938.1 + 4341 0.72 0.171957
Target:  5'- aCCGCGCUCgCCgAGCUGCgaaGGCaGAcGGAc -3'
miRNA:   3'- -GGCGCGAG-GGgUCGACGg--CUG-CU-CCU- -5'
31882 5' -62.1 NC_006938.1 + 40210 0.72 0.185607
Target:  5'- gCCGCGacaCCCGGCUGaCCGGCgcuguccgcgucGAGGAa -3'
miRNA:   3'- -GGCGCgagGGGUCGAC-GGCUG------------CUCCU- -5'
31882 5' -62.1 NC_006938.1 + 13740 0.72 0.185607
Target:  5'- gCCGCGCUCCaugagcaugUCAGCgcgGCCGAgUGAcGGAa -3'
miRNA:   3'- -GGCGCGAGG---------GGUCGa--CGGCU-GCU-CCU- -5'
31882 5' -62.1 NC_006938.1 + 10953 0.71 0.189885
Target:  5'- gCCGCGUUCCCCugcacuuGCUGCCaACaucggccgggucuGGGGAg -3'
miRNA:   3'- -GGCGCGAGGGGu------CGACGGcUG-------------CUCCU- -5'
31882 5' -62.1 NC_006938.1 + 61477 0.71 0.200205
Target:  5'- uCUGCGUUCCUaGGCUGaccCCGuCGAGGAa -3'
miRNA:   3'- -GGCGCGAGGGgUCGAC---GGCuGCUCCU- -5'
31882 5' -62.1 NC_006938.1 + 40606 0.71 0.210484
Target:  5'- aUGCGCUCCCCGGa-GCUGGCGGa-- -3'
miRNA:   3'- gGCGCGAGGGGUCgaCGGCUGCUccu -5'
31882 5' -62.1 NC_006938.1 + 14961 0.69 0.260587
Target:  5'- -gGCGCUCaacuCCCGGCucccguugacaaacUGCCGgccACGAGGAu -3'
miRNA:   3'- ggCGCGAG----GGGUCG--------------ACGGC---UGCUCCU- -5'
31882 5' -62.1 NC_006938.1 + 29385 0.69 0.266931
Target:  5'- cCUGCGCcugcacuUCCCCGGCgagggacUGaucaaguucaugaCCGACGAGGAc -3'
miRNA:   3'- -GGCGCG-------AGGGGUCG-------AC-------------GGCUGCUCCU- -5'
31882 5' -62.1 NC_006938.1 + 26154 0.69 0.268859
Target:  5'- uCCGCGCga-CCAGCUGCC-ACGcagccgguacGGGAu -3'
miRNA:   3'- -GGCGCGaggGGUCGACGGcUGC----------UCCU- -5'
31882 5' -62.1 NC_006938.1 + 17242 0.69 0.268859
Target:  5'- -gGCGaUCUCCAGgucCUGuCCGGCGAGGAc -3'
miRNA:   3'- ggCGCgAGGGGUC---GAC-GGCUGCUCCU- -5'
31882 5' -62.1 NC_006938.1 + 51567 0.69 0.275365
Target:  5'- gCCuCGaCUgCCCCGGCUccgGCCGcgACGAGGAu -3'
miRNA:   3'- -GGcGC-GA-GGGGUCGA---CGGC--UGCUCCU- -5'
31882 5' -62.1 NC_006938.1 + 44134 0.68 0.331965
Target:  5'- cCCGCGCcagUCCCGGUUGCCaccuccauucccGcCGAGGc -3'
miRNA:   3'- -GGCGCGa--GGGGUCGACGG------------CuGCUCCu -5'
31882 5' -62.1 NC_006938.1 + 63377 0.68 0.337305
Target:  5'- aCCGCGUgCCaCCAGCUGCuucugucgugccagCGAccgaacacccuCGAGGAc -3'
miRNA:   3'- -GGCGCGaGG-GGUCGACG--------------GCU-----------GCUCCU- -5'
31882 5' -62.1 NC_006938.1 + 24746 0.67 0.360895
Target:  5'- cCCGCGUggCCCGGUccauuugaacuucaUGCCGugGccGGGGu -3'
miRNA:   3'- -GGCGCGagGGGUCG--------------ACGGCugC--UCCU- -5'
31882 5' -62.1 NC_006938.1 + 30403 0.67 0.371469
Target:  5'- aCGgGCUgaCCCGGCuucgUGCgGACGGGGu -3'
miRNA:   3'- gGCgCGAg-GGGUCG----ACGgCUGCUCCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.