Results 1 - 20 of 29 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31882 | 5' | -62.1 | NC_006938.1 | + | 46589 | 1.1 | 0.00026 |
Target: 5'- cCCGCGCUCCCCAGCUGCCGACGAGGAg -3' miRNA: 3'- -GGCGCGAGGGGUCGACGGCUGCUCCU- -5' |
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31882 | 5' | -62.1 | NC_006938.1 | + | 47018 | 0.66 | 0.42293 |
Target: 5'- aCGaCGCUgCCCugGGCgGCCGAaucuucgaGAGGAc -3' miRNA: 3'- gGC-GCGAgGGG--UCGaCGGCUg-------CUCCU- -5' |
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31882 | 5' | -62.1 | NC_006938.1 | + | 36179 | 0.66 | 0.414057 |
Target: 5'- gCCGUagUCUCCGugucGCUGCCaucGACGGGGAc -3' miRNA: 3'- -GGCGcgAGGGGU----CGACGG---CUGCUCCU- -5' |
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31882 | 5' | -62.1 | NC_006938.1 | + | 38985 | 0.66 | 0.414057 |
Target: 5'- cCCGaCGUUCCUCGGUgcggaggugauUGUCGACGAuGGc -3' miRNA: 3'- -GGC-GCGAGGGGUCG-----------ACGGCUGCU-CCu -5' |
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31882 | 5' | -62.1 | NC_006938.1 | + | 9901 | 0.66 | 0.414057 |
Target: 5'- gCGCGUUCCC--GCUGUaCGACGAGc- -3' miRNA: 3'- gGCGCGAGGGguCGACG-GCUGCUCcu -5' |
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31882 | 5' | -62.1 | NC_006938.1 | + | 18190 | 0.67 | 0.379745 |
Target: 5'- uCCGCGCggCCggacaCCAGCUgaacGCCGAUGAcgcuguGGAc -3' miRNA: 3'- -GGCGCGa-GG-----GGUCGA----CGGCUGCU------CCU- -5' |
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31882 | 5' | -62.1 | NC_006938.1 | + | 51288 | 0.67 | 0.371469 |
Target: 5'- gCGCGUUCCgCCAGCUcGCC-ACGAc-- -3' miRNA: 3'- gGCGCGAGG-GGUCGA-CGGcUGCUccu -5' |
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31882 | 5' | -62.1 | NC_006938.1 | + | 29385 | 0.69 | 0.266931 |
Target: 5'- cCUGCGCcugcacuUCCCCGGCgagggacUGaucaaguucaugaCCGACGAGGAc -3' miRNA: 3'- -GGCGCG-------AGGGGUCG-------AC-------------GGCUGCUCCU- -5' |
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31882 | 5' | -62.1 | NC_006938.1 | + | 14961 | 0.69 | 0.260587 |
Target: 5'- -gGCGCUCaacuCCCGGCucccguugacaaacUGCCGgccACGAGGAu -3' miRNA: 3'- ggCGCGAG----GGGUCG--------------ACGGC---UGCUCCU- -5' |
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31882 | 5' | -62.1 | NC_006938.1 | + | 40606 | 0.71 | 0.210484 |
Target: 5'- aUGCGCUCCCCGGa-GCUGGCGGa-- -3' miRNA: 3'- gGCGCGAGGGGUCgaCGGCUGCUccu -5' |
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31882 | 5' | -62.1 | NC_006938.1 | + | 10953 | 0.71 | 0.189885 |
Target: 5'- gCCGCGUUCCCCugcacuuGCUGCCaACaucggccgggucuGGGGAg -3' miRNA: 3'- -GGCGCGAGGGGu------CGACGGcUG-------------CUCCU- -5' |
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31882 | 5' | -62.1 | NC_006938.1 | + | 4341 | 0.72 | 0.171957 |
Target: 5'- aCCGCGCUCgCCgAGCUGCgaaGGCaGAcGGAc -3' miRNA: 3'- -GGCGCGAG-GGgUCGACGg--CUG-CU-CCU- -5' |
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31882 | 5' | -62.1 | NC_006938.1 | + | 51567 | 0.69 | 0.275365 |
Target: 5'- gCCuCGaCUgCCCCGGCUccgGCCGcgACGAGGAu -3' miRNA: 3'- -GGcGC-GA-GGGGUCGA---CGGC--UGCUCCU- -5' |
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31882 | 5' | -62.1 | NC_006938.1 | + | 44134 | 0.68 | 0.331965 |
Target: 5'- cCCGCGCcagUCCCGGUUGCCaccuccauucccGcCGAGGc -3' miRNA: 3'- -GGCGCGa--GGGGUCGACGG------------CuGCUCCu -5' |
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31882 | 5' | -62.1 | NC_006938.1 | + | 63377 | 0.68 | 0.337305 |
Target: 5'- aCCGCGUgCCaCCAGCUGCuucugucgugccagCGAccgaacacccuCGAGGAc -3' miRNA: 3'- -GGCGCGaGG-GGUCGACG--------------GCU-----------GCUCCU- -5' |
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31882 | 5' | -62.1 | NC_006938.1 | + | 24746 | 0.67 | 0.360895 |
Target: 5'- cCCGCGUggCCCGGUccauuugaacuucaUGCCGugGccGGGGu -3' miRNA: 3'- -GGCGCGagGGGUCG--------------ACGGCugC--UCCU- -5' |
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31882 | 5' | -62.1 | NC_006938.1 | + | 30403 | 0.67 | 0.371469 |
Target: 5'- aCGgGCUgaCCCGGCuucgUGCgGACGGGGu -3' miRNA: 3'- gGCgCGAg-GGGUCG----ACGgCUGCUCCu -5' |
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31882 | 5' | -62.1 | NC_006938.1 | + | 11082 | 0.67 | 0.38561 |
Target: 5'- aCCGUcgcgacaggccaugGCUCCCCAGacccgGCCGAUGuguGGc -3' miRNA: 3'- -GGCG--------------CGAGGGGUCga---CGGCUGCu--CCu -5' |
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31882 | 5' | -62.1 | NC_006938.1 | + | 43518 | 0.66 | 0.405301 |
Target: 5'- aCCGCGUaugUCCCCGcCU-CCcACGGGGAg -3' miRNA: 3'- -GGCGCG---AGGGGUcGAcGGcUGCUCCU- -5' |
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31882 | 5' | -62.1 | NC_006938.1 | + | 41696 | 0.8 | 0.05039 |
Target: 5'- gCGCGCUCCCCuGGCcgUGCCGACGuuGAu -3' miRNA: 3'- gGCGCGAGGGG-UCG--ACGGCUGCucCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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