miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31887 5' -59 NC_006938.1 + 60530 0.66 0.521409
Target:  5'- --aGCUGCUACaucgcgcauGGCuCGCUCaCCGGGa -3'
miRNA:   3'- uugCGACGAUG---------UCG-GCGAGcGGCUCc -5'
31887 5' -59 NC_006938.1 + 48437 0.66 0.501
Target:  5'- gGACGC-GCUcgucACcGCCGCccgaGCCGGGGu -3'
miRNA:   3'- -UUGCGaCGA----UGuCGGCGag--CGGCUCC- -5'
31887 5' -59 NC_006938.1 + 9598 0.66 0.511163
Target:  5'- uACGgUgGgaGgGGCUGCUCGCCGcAGGg -3'
miRNA:   3'- uUGCgA-CgaUgUCGGCGAGCGGC-UCC- -5'
31887 5' -59 NC_006938.1 + 22025 0.66 0.521409
Target:  5'- cGCGCUGCaACuGCCGCaccauguaGCCGuuGGa -3'
miRNA:   3'- uUGCGACGaUGuCGGCGag------CGGCu-CC- -5'
31887 5' -59 NC_006938.1 + 32791 0.66 0.531734
Target:  5'- --aGCUGCuUGCGGauCgGCUCGCCGgucucGGGg -3'
miRNA:   3'- uugCGACG-AUGUC--GgCGAGCGGC-----UCC- -5'
31887 5' -59 NC_006938.1 + 12861 0.66 0.518327
Target:  5'- cGAC-CUGUgggccaauccuggacCAGgCGCUCGCCGGGGc -3'
miRNA:   3'- -UUGcGACGau-------------GUCgGCGAGCGGCUCC- -5'
31887 5' -59 NC_006938.1 + 35764 0.66 0.505055
Target:  5'- cGAC-CUGCUGCAGUCGaUCGUgaccacccgucccuuCGAGGg -3'
miRNA:   3'- -UUGcGACGAUGUCGGCgAGCG---------------GCUCC- -5'
31887 5' -59 NC_006938.1 + 29918 0.67 0.490928
Target:  5'- -cCGCUGacagACAGCgGUaUCGCgGAGGg -3'
miRNA:   3'- uuGCGACga--UGUCGgCG-AGCGgCUCC- -5'
31887 5' -59 NC_006938.1 + 21555 0.67 0.442081
Target:  5'- cGACGUUGaaGCAGUgGUcccCGCCGAGGu -3'
miRNA:   3'- -UUGCGACgaUGUCGgCGa--GCGGCUCC- -5'
31887 5' -59 NC_006938.1 + 7891 0.67 0.490928
Target:  5'- --aGCU-CUACGGCUGCUCGCUccuGGu -3'
miRNA:   3'- uugCGAcGAUGUCGGCGAGCGGcu-CC- -5'
31887 5' -59 NC_006938.1 + 55396 0.67 0.471074
Target:  5'- -uUGCaGCaguCGGCgCGCUCGCCGcAGGc -3'
miRNA:   3'- uuGCGaCGau-GUCG-GCGAGCGGC-UCC- -5'
31887 5' -59 NC_006938.1 + 29767 0.67 0.471074
Target:  5'- --aGCaGCUacgacaugGCAGCCauccgGCUCgGCCGAGGg -3'
miRNA:   3'- uugCGaCGA--------UGUCGG-----CGAG-CGGCUCC- -5'
31887 5' -59 NC_006938.1 + 47019 0.67 0.451635
Target:  5'- cGACGCUGCccuggGCGGCCGaaucuUCGa-GAGGa -3'
miRNA:   3'- -UUGCGACGa----UGUCGGCg----AGCggCUCC- -5'
31887 5' -59 NC_006938.1 + 7742 0.68 0.414125
Target:  5'- uGugGUgGCcggGCAGCCcuuCUCGCUGAGGa -3'
miRNA:   3'- -UugCGaCGa--UGUCGGc--GAGCGGCUCC- -5'
31887 5' -59 NC_006938.1 + 53013 0.68 0.387283
Target:  5'- uAACGCUug-GCAGCuCGCUCGCCGc-- -3'
miRNA:   3'- -UUGCGAcgaUGUCG-GCGAGCGGCucc -5'
31887 5' -59 NC_006938.1 + 18935 0.69 0.370037
Target:  5'- cACGCUGCU-CGGCCG-UCGCUGccgcuucagauGGGa -3'
miRNA:   3'- uUGCGACGAuGUCGGCgAGCGGC-----------UCC- -5'
31887 5' -59 NC_006938.1 + 50092 0.69 0.361613
Target:  5'- cAACGCUcagGCcGCGaucGUCGC-CGCCGAGGg -3'
miRNA:   3'- -UUGCGA---CGaUGU---CGGCGaGCGGCUCC- -5'
31887 5' -59 NC_006938.1 + 26182 0.69 0.370037
Target:  5'- --gGuCUGU--CGGCUGCUUGCCGGGGa -3'
miRNA:   3'- uugC-GACGauGUCGGCGAGCGGCUCC- -5'
31887 5' -59 NC_006938.1 + 42507 0.69 0.373444
Target:  5'- aGGCGUcGCUcCGGCCGCgUCggcgaagaacucgacGCCGAGGa -3'
miRNA:   3'- -UUGCGaCGAuGUCGGCG-AG---------------CGGCUCC- -5'
31887 5' -59 NC_006938.1 + 36825 0.69 0.361613
Target:  5'- uGACGCUGCUGCagaAGCUGCaggcaaUCGCCa--- -3'
miRNA:   3'- -UUGCGACGAUG---UCGGCG------AGCGGcucc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.