miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31891 3' -52.4 NC_006938.1 + 28310 0.66 0.918871
Target:  5'- aGGUGUGcccCAUCcAGAUCcGC-GCCGCg -3'
miRNA:   3'- -CCGCGCaa-GUAGcUCUAG-CGuUGGCG- -5'
31891 3' -52.4 NC_006938.1 + 51490 0.66 0.912653
Target:  5'- cGGgGCa---GUCGAGGcgaUCGUcGCCGCg -3'
miRNA:   3'- -CCgCGcaagUAGCUCU---AGCGuUGGCG- -5'
31891 3' -52.4 NC_006938.1 + 9434 0.66 0.912653
Target:  5'- cGGCacccUGUUCAUCGAccaGAUC--AACCGCa -3'
miRNA:   3'- -CCGc---GCAAGUAGCU---CUAGcgUUGGCG- -5'
31891 3' -52.4 NC_006938.1 + 50901 0.66 0.906164
Target:  5'- aGGCuGCGagCAaUGAcGUCuGCGACCGCu -3'
miRNA:   3'- -CCG-CGCaaGUaGCUcUAG-CGUUGGCG- -5'
31891 3' -52.4 NC_006938.1 + 48238 0.66 0.906164
Target:  5'- uGGCGCcaucgUCAaCGAGuUCGCAcucaacAUCGCu -3'
miRNA:   3'- -CCGCGca---AGUaGCUCuAGCGU------UGGCG- -5'
31891 3' -52.4 NC_006938.1 + 24893 0.66 0.899405
Target:  5'- uGGagaGCGgcugcCAUCGGuGUCGUGAUCGCg -3'
miRNA:   3'- -CCg--CGCaa---GUAGCUcUAGCGUUGGCG- -5'
31891 3' -52.4 NC_006938.1 + 38997 0.66 0.890219
Target:  5'- cGGUGCGgaggugaUUGUCGAcGAUgGCAugccgaauggcacuGCCGCu -3'
miRNA:   3'- -CCGCGCa------AGUAGCU-CUAgCGU--------------UGGCG- -5'
31891 3' -52.4 NC_006938.1 + 18921 0.66 0.88509
Target:  5'- cGCGgGUUCAucaccacgcugcUCGGccGUCGCuGCCGCu -3'
miRNA:   3'- cCGCgCAAGU------------AGCUc-UAGCGuUGGCG- -5'
31891 3' -52.4 NC_006938.1 + 17353 0.67 0.877543
Target:  5'- cGCGCGgcggaCGuuGAUgGCGACCGCc -3'
miRNA:   3'- cCGCGCaaguaGCu-CUAgCGUUGGCG- -5'
31891 3' -52.4 NC_006938.1 + 22040 0.67 0.877543
Target:  5'- uGGCGCacUCGU-GAGcgCGCugcaacuGCCGCa -3'
miRNA:   3'- -CCGCGcaAGUAgCUCuaGCGu------UGGCG- -5'
31891 3' -52.4 NC_006938.1 + 24988 0.67 0.869746
Target:  5'- -cCGCGaUCA-CGAcaccGAUgGCAGCCGCu -3'
miRNA:   3'- ccGCGCaAGUaGCU----CUAgCGUUGGCG- -5'
31891 3' -52.4 NC_006938.1 + 40122 0.67 0.869746
Target:  5'- aGCGCcggUCAgcCGGGuGUCGCGGCCGa -3'
miRNA:   3'- cCGCGca-AGUa-GCUC-UAGCGUUGGCg -5'
31891 3' -52.4 NC_006938.1 + 4303 0.67 0.869746
Target:  5'- aGCGCGUccacaccuUCAagGAGAacccgCGCcuggaGACCGCg -3'
miRNA:   3'- cCGCGCA--------AGUagCUCUa----GCG-----UUGGCG- -5'
31891 3' -52.4 NC_006938.1 + 60841 0.67 0.861703
Target:  5'- uGGCGuCGgaaucacaaaCGUCGAGAUgGUucaGACCGUg -3'
miRNA:   3'- -CCGC-GCaa--------GUAGCUCUAgCG---UUGGCG- -5'
31891 3' -52.4 NC_006938.1 + 12789 0.67 0.861703
Target:  5'- gGGUcCGUUCAUggcguaCGAGGUCGUcacgGACCuGCg -3'
miRNA:   3'- -CCGcGCAAGUA------GCUCUAGCG----UUGG-CG- -5'
31891 3' -52.4 NC_006938.1 + 41035 0.67 0.853421
Target:  5'- aGGCGUcgcuGUUCGcgucUCGGGAgCGCAcUCGCc -3'
miRNA:   3'- -CCGCG----CAAGU----AGCUCUaGCGUuGGCG- -5'
31891 3' -52.4 NC_006938.1 + 63406 0.68 0.836175
Target:  5'- aGGUGCcgcgaGUUCAUCGucuuGGagGC-ACCGCg -3'
miRNA:   3'- -CCGCG-----CAAGUAGCu---CUagCGuUGGCG- -5'
31891 3' -52.4 NC_006938.1 + 59036 0.68 0.830831
Target:  5'- -cCGCGUUCGuguugucgauggucuUCGuGAUCGUcgcagugauGGCCGCg -3'
miRNA:   3'- ccGCGCAAGU---------------AGCuCUAGCG---------UUGGCG- -5'
31891 3' -52.4 NC_006938.1 + 13403 0.68 0.827227
Target:  5'- cGCGCGUUCAUacAGGaCGCcACCGa -3'
miRNA:   3'- cCGCGCAAGUAgcUCUaGCGuUGGCg -5'
31891 3' -52.4 NC_006938.1 + 15653 0.68 0.827227
Target:  5'- aGCGCGgucggCGUCGAGGucggUCGguACUGg -3'
miRNA:   3'- cCGCGCaa---GUAGCUCU----AGCguUGGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.