miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31891 3' -52.4 NC_006938.1 + 51532 1.14 0.001283
Target:  5'- cGGCGCGUUCAUCGAGAUCGCAACCGCc -3'
miRNA:   3'- -CCGCGCAAGUAGCUCUAGCGUUGGCG- -5'
31891 3' -52.4 NC_006938.1 + 51286 0.74 0.470927
Target:  5'- uGGCGCGUUCcgCcAGcUCGCcacGACCGUg -3'
miRNA:   3'- -CCGCGCAAGuaGcUCuAGCG---UUGGCG- -5'
31891 3' -52.4 NC_006938.1 + 51244 0.74 0.511947
Target:  5'- cGCGCGgaacgCGAcGAUCGCGGCCGg -3'
miRNA:   3'- cCGCGCaaguaGCU-CUAGCGUUGGCg -5'
31891 3' -52.4 NC_006938.1 + 49308 0.72 0.597767
Target:  5'- cGGCGCGgaacuucUCGUUGuGGAUgGCGGCCuGCu -3'
miRNA:   3'- -CCGCGCa------AGUAGC-UCUAgCGUUGG-CG- -5'
31891 3' -52.4 NC_006938.1 + 27879 0.72 0.613093
Target:  5'- -aCGCGUUCuuGUCGGGGUCGCcgcucucuccguugaGACCGa -3'
miRNA:   3'- ccGCGCAAG--UAGCUCUAGCG---------------UUGGCg -5'
31891 3' -52.4 NC_006938.1 + 35915 0.72 0.619673
Target:  5'- aGGCGCG-UCAUCG-GAccguUCGCcAgCGCg -3'
miRNA:   3'- -CCGCGCaAGUAGCuCU----AGCGuUgGCG- -5'
31891 3' -52.4 NC_006938.1 + 32921 0.71 0.641623
Target:  5'- aGCGC-UUCAUcaucCGAGGUCGUggaagcucGACCGCu -3'
miRNA:   3'- cCGCGcAAGUA----GCUCUAGCG--------UUGGCG- -5'
31891 3' -52.4 NC_006938.1 + 18820 0.7 0.717627
Target:  5'- uGGuCGCGggCGaCGAGGgcgCGCGGCUGUu -3'
miRNA:   3'- -CC-GCGCaaGUaGCUCUa--GCGUUGGCG- -5'
31891 3' -52.4 NC_006938.1 + 46785 0.7 0.728237
Target:  5'- uGGCGCaucgagaUgGUCGAGAUCcuGCAGCCcGCc -3'
miRNA:   3'- -CCGCGca-----AgUAGCUCUAG--CGUUGG-CG- -5'
31891 3' -52.4 NC_006938.1 + 10342 0.69 0.749159
Target:  5'- aGGCGCGa-CGUUGcAGGUCuuGCuGACCGCg -3'
miRNA:   3'- -CCGCGCaaGUAGC-UCUAG--CG-UUGGCG- -5'
31891 3' -52.4 NC_006938.1 + 2851 0.68 0.798236
Target:  5'- cGGCaaGCGgaccaUCAUaacgcucCGAGGUCGCGACUGg -3'
miRNA:   3'- -CCG--CGCa----AGUA-------GCUCUAGCGUUGGCg -5'
31891 3' -52.4 NC_006938.1 + 30709 0.68 0.818075
Target:  5'- gGGCGCGUUCGUgcuccCGAcgaccuccucGGUCucccagcccuuGUAGCCGCc -3'
miRNA:   3'- -CCGCGCAAGUA-----GCU----------CUAG-----------CGUUGGCG- -5'
31891 3' -52.4 NC_006938.1 + 39664 0.68 0.818075
Target:  5'- cGGCGaCG-UCGUcCGAGAagUCGaCGGCCGa -3'
miRNA:   3'- -CCGC-GCaAGUA-GCUCU--AGC-GUUGGCg -5'
31891 3' -52.4 NC_006938.1 + 44035 0.68 0.818075
Target:  5'- cGGCGgGa--AUgGAGGUgGCAACCGg -3'
miRNA:   3'- -CCGCgCaagUAgCUCUAgCGUUGGCg -5'
31891 3' -52.4 NC_006938.1 + 15653 0.68 0.827227
Target:  5'- aGCGCGgucggCGUCGAGGucggUCGguACUGg -3'
miRNA:   3'- cCGCGCaa---GUAGCUCU----AGCguUGGCg -5'
31891 3' -52.4 NC_006938.1 + 13403 0.68 0.827227
Target:  5'- cGCGCGUUCAUacAGGaCGCcACCGa -3'
miRNA:   3'- cCGCGCAAGUAgcUCUaGCGuUGGCg -5'
31891 3' -52.4 NC_006938.1 + 8096 0.68 0.827227
Target:  5'- ------aUCAUCGAGAUgGCGACcCGCg -3'
miRNA:   3'- ccgcgcaAGUAGCUCUAgCGUUG-GCG- -5'
31891 3' -52.4 NC_006938.1 + 15152 0.68 0.827227
Target:  5'- gGGCGuCGUUCAcguuUCGAGcgCGUAucacuuucacGCgGCu -3'
miRNA:   3'- -CCGC-GCAAGU----AGCUCuaGCGU----------UGgCG- -5'
31891 3' -52.4 NC_006938.1 + 59036 0.68 0.830831
Target:  5'- -cCGCGUUCGuguugucgauggucuUCGuGAUCGUcgcagugauGGCCGCg -3'
miRNA:   3'- ccGCGCAAGU---------------AGCuCUAGCG---------UUGGCG- -5'
31891 3' -52.4 NC_006938.1 + 63406 0.68 0.836175
Target:  5'- aGGUGCcgcgaGUUCAUCGucuuGGagGC-ACCGCg -3'
miRNA:   3'- -CCGCG-----CAAGUAGCu---CUagCGuUGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.