Results 1 - 20 of 36 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31891 | 3' | -52.4 | NC_006938.1 | + | 2851 | 0.68 | 0.798236 |
Target: 5'- cGGCaaGCGgaccaUCAUaacgcucCGAGGUCGCGACUGg -3' miRNA: 3'- -CCG--CGCa----AGUA-------GCUCUAGCGUUGGCg -5' |
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31891 | 3' | -52.4 | NC_006938.1 | + | 4303 | 0.67 | 0.869746 |
Target: 5'- aGCGCGUccacaccuUCAagGAGAacccgCGCcuggaGACCGCg -3' miRNA: 3'- cCGCGCA--------AGUagCUCUa----GCG-----UUGGCG- -5' |
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31891 | 3' | -52.4 | NC_006938.1 | + | 8096 | 0.68 | 0.827227 |
Target: 5'- ------aUCAUCGAGAUgGCGACcCGCg -3' miRNA: 3'- ccgcgcaAGUAGCUCUAgCGUUG-GCG- -5' |
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31891 | 3' | -52.4 | NC_006938.1 | + | 9434 | 0.66 | 0.912653 |
Target: 5'- cGGCacccUGUUCAUCGAccaGAUC--AACCGCa -3' miRNA: 3'- -CCGc---GCAAGUAGCU---CUAGcgUUGGCG- -5' |
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31891 | 3' | -52.4 | NC_006938.1 | + | 10342 | 0.69 | 0.749159 |
Target: 5'- aGGCGCGa-CGUUGcAGGUCuuGCuGACCGCg -3' miRNA: 3'- -CCGCGCaaGUAGC-UCUAG--CG-UUGGCG- -5' |
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31891 | 3' | -52.4 | NC_006938.1 | + | 12789 | 0.67 | 0.861703 |
Target: 5'- gGGUcCGUUCAUggcguaCGAGGUCGUcacgGACCuGCg -3' miRNA: 3'- -CCGcGCAAGUA------GCUCUAGCG----UUGG-CG- -5' |
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31891 | 3' | -52.4 | NC_006938.1 | + | 13403 | 0.68 | 0.827227 |
Target: 5'- cGCGCGUUCAUacAGGaCGCcACCGa -3' miRNA: 3'- cCGCGCAAGUAgcUCUaGCGuUGGCg -5' |
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31891 | 3' | -52.4 | NC_006938.1 | + | 15152 | 0.68 | 0.827227 |
Target: 5'- gGGCGuCGUUCAcguuUCGAGcgCGUAucacuuucacGCgGCu -3' miRNA: 3'- -CCGC-GCAAGU----AGCUCuaGCGU----------UGgCG- -5' |
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31891 | 3' | -52.4 | NC_006938.1 | + | 15653 | 0.68 | 0.827227 |
Target: 5'- aGCGCGgucggCGUCGAGGucggUCGguACUGg -3' miRNA: 3'- cCGCGCaa---GUAGCUCU----AGCguUGGCg -5' |
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31891 | 3' | -52.4 | NC_006938.1 | + | 17353 | 0.67 | 0.877543 |
Target: 5'- cGCGCGgcggaCGuuGAUgGCGACCGCc -3' miRNA: 3'- cCGCGCaaguaGCu-CUAgCGUUGGCG- -5' |
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31891 | 3' | -52.4 | NC_006938.1 | + | 18820 | 0.7 | 0.717627 |
Target: 5'- uGGuCGCGggCGaCGAGGgcgCGCGGCUGUu -3' miRNA: 3'- -CC-GCGCaaGUaGCUCUa--GCGUUGGCG- -5' |
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31891 | 3' | -52.4 | NC_006938.1 | + | 18921 | 0.66 | 0.88509 |
Target: 5'- cGCGgGUUCAucaccacgcugcUCGGccGUCGCuGCCGCu -3' miRNA: 3'- cCGCgCAAGU------------AGCUc-UAGCGuUGGCG- -5' |
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31891 | 3' | -52.4 | NC_006938.1 | + | 22040 | 0.67 | 0.877543 |
Target: 5'- uGGCGCacUCGU-GAGcgCGCugcaacuGCCGCa -3' miRNA: 3'- -CCGCGcaAGUAgCUCuaGCGu------UGGCG- -5' |
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31891 | 3' | -52.4 | NC_006938.1 | + | 24893 | 0.66 | 0.899405 |
Target: 5'- uGGagaGCGgcugcCAUCGGuGUCGUGAUCGCg -3' miRNA: 3'- -CCg--CGCaa---GUAGCUcUAGCGUUGGCG- -5' |
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31891 | 3' | -52.4 | NC_006938.1 | + | 24988 | 0.67 | 0.869746 |
Target: 5'- -cCGCGaUCA-CGAcaccGAUgGCAGCCGCu -3' miRNA: 3'- ccGCGCaAGUaGCU----CUAgCGUUGGCG- -5' |
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31891 | 3' | -52.4 | NC_006938.1 | + | 27879 | 0.72 | 0.613093 |
Target: 5'- -aCGCGUUCuuGUCGGGGUCGCcgcucucuccguugaGACCGa -3' miRNA: 3'- ccGCGCAAG--UAGCUCUAGCG---------------UUGGCg -5' |
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31891 | 3' | -52.4 | NC_006938.1 | + | 28310 | 0.66 | 0.918871 |
Target: 5'- aGGUGUGcccCAUCcAGAUCcGC-GCCGCg -3' miRNA: 3'- -CCGCGCaa-GUAGcUCUAG-CGuUGGCG- -5' |
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31891 | 3' | -52.4 | NC_006938.1 | + | 30709 | 0.68 | 0.818075 |
Target: 5'- gGGCGCGUUCGUgcuccCGAcgaccuccucGGUCucccagcccuuGUAGCCGCc -3' miRNA: 3'- -CCGCGCAAGUA-----GCU----------CUAG-----------CGUUGGCG- -5' |
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31891 | 3' | -52.4 | NC_006938.1 | + | 32921 | 0.71 | 0.641623 |
Target: 5'- aGCGC-UUCAUcaucCGAGGUCGUggaagcucGACCGCu -3' miRNA: 3'- cCGCGcAAGUA----GCUCUAGCG--------UUGGCG- -5' |
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31891 | 3' | -52.4 | NC_006938.1 | + | 35915 | 0.72 | 0.619673 |
Target: 5'- aGGCGCG-UCAUCG-GAccguUCGCcAgCGCg -3' miRNA: 3'- -CCGCGCaAGUAGCuCU----AGCGuUgGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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